PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.005G078100.1 | ||||||||
Common Name | B456_005G078100, LOC105797031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 330aa MW: 36072.9 Da PI: 6.9517 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67 | 3.6e-21 | 123 | 172 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + + +r++lg+f+tae Aa+a+++a+++++g Gorai.005G078100.1 123 RYRGVRQRP-WGKWAAEIRDP---N-KaARVWLGTFDTAEAAARAYDEAALRFRG 172 7********.**********9...3.35*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.8E-15 | 123 | 172 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-37 | 123 | 186 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.791 | 123 | 180 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-23 | 123 | 181 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-33 | 123 | 181 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-12 | 124 | 135 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.11E-16 | 131 | 182 | No hit | No description |
PRINTS | PR00367 | 7.6E-12 | 146 | 162 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 330 aa Download sequence Send to blast |
MFFGSQSHHQ ATEMSAMVSA LTHVVSGQRF AAWDCYPFNM DATCFQQTQT GSASGLAPCK 60 IGQKRGRAED VTAHLVQTSS HAHSSSPATS VTEEIETAAT TSMETAGEAA AASNEETGEP 120 RRRYRGVRQR PWGKWAAEIR DPNKAARVWL GTFDTAEAAA RAYDEAALRF RGNRAKLNFP 180 ENVRVVVPQP MQNFPTTQTP VSSSQTTHFP SYYQSPPTAD MLRDYWQYSQ LLQSCNDFHE 240 QQATSLLNQM IQSSQLPNVQ PPLLSSSLSP PLLSSPSSSA SASFPLLFGE QHQMGISRPP 300 FNQTQVSQSD FPVPPPPWSH PGHHSSSTC* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-23 | 122 | 183 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-23 | 122 | 183 | 4 | 66 | ATERF1 |
3gcc_A | 1e-23 | 122 | 183 | 4 | 66 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012482409.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF110-like | ||||
TrEMBL | A0A0D2SCK3 | 0.0 | A0A0D2SCK3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G078100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15224 | 8 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G50080.1 | 1e-16 | ethylene response factor 110 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.005G078100.1 |
Entrez Gene | 105797031 |
Publications ? help Back to Top | |||
---|---|---|---|
|