PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G076200.4

Common Name

B456_005G076200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 579aa MW: 64948.7 Da PI: 4.8211

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G076200.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.1	7e-53	21	147	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 ppGfrFhPtdeelv +yLk+k+ +k+l+l ++i+e+d+yk +P++Lp + +k+++++w+fF++rd+ky++g r+nrat +gyWkatgkd+ Gorai.005G076200.4 21 PPGFRFHPTDEELVLYYLKRKICKKRLKL-DIIRETDVYKRDPEELPgQsVLKNGDRQWFFFCPRDRKYPNGARSNRATIHGYWKATGKDR 110 8**************************.99**********96447788999****************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ ++++vg+kktLvfy+grap+ge+tdWvmhey+l Gorai.005G076200.4 111 SITC-NSRVVGIKKTLVFYRGRAPNGERTDWVMHEYTL 147 .999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.19E-59	17	170	IPR003441	NAC domain
PROSITE profile	PS51005	55.462	20	170	IPR003441	NAC domain
Pfam	PF02365	1.1E-27	21	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence Send to blast
MKVTATAVTV DSGFGDDQVW PPGFRFHPTD EELVLYYLKR KICKKRLKLD IIRETDVYKR 60 DPEELPGQSV LKNGDRQWFF FCPRDRKYPN GARSNRATIH GYWKATGKDR SITCNSRVVG 120 IKKTLVFYRG RAPNGERTDW VMHEYTLDEE ELKRCQNVKD YYALYKLYKK SGPGPKNGEQ 180 YGAPFKEEAW DDEEYSSIPL DTITPVKPPN EVIPDDNVKA NVQSESPLSD IEEFMRQFAD 240 EPALPQPQAY HSHVLPQVVS AEDTQSTLLD PSPRGVLFPE QLTVLHGQAS FEFPESPISQ 300 LLLQEAPEVT PVTDHLDQVP QLCEEDFLEI DDLLGPEPLI SNIEKPVENK QFNELDGLSE 360 FDLYHDAAMF LQDMGSIDQG TVPFLYDNMI NQWQNQANAN MMEQHLQPQL NASGGNMLNQ 420 MVDYHGQNQQ LQMDQINGAL WTHDQNGDVF IPSGSNLGNA SPTSGFVNNG PKQDQGNKND 480 GSGGGSWFSS SLWSFVDSIP TAPASAAESP LVNRALERMS SFSKLRIHAM NTAVNGSASA 540 RRRSRNRGFF FISILGALCA VLWFLIGTVR VLGRSISS*

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence Send to blast

MKVTATAVTV DSGFGDDQVW PPGFRFHPTD EELVLYYLKR KICKKRLKLD IIRETDVYKR  60
DPEELPGQSV LKNGDRQWFF FCPRDRKYPN GARSNRATIH GYWKATGKDR SITCNSRVVG  120
IKKTLVFYRG RAPNGERTDW VMHEYTLDEE ELKRCQNVKD YYALYKLYKK SGPGPKNGEQ  180
YGAPFKEEAW DDEEYSSIPL DTITPVKPPN EVIPDDNVKA NVQSESPLSD IEEFMRQFAD  240
EPALPQPQAY HSHVLPQVVS AEDTQSTLLD PSPRGVLFPE QLTVLHGQAS FEFPESPISQ  300
LLLQEAPEVT PVTDHLDQVP QLCEEDFLEI DDLLGPEPLI SNIEKPVENK QFNELDGLSE  360
FDLYHDAAMF LQDMGSIDQG TVPFLYDNMI NQWQNQANAN MMEQHLQPQL NASGGNMLNQ  420
MVDYHGQNQQ LQMDQINGAL WTHDQNGDVF IPSGSNLGNA SPTSGFVNNG PKQDQGNKND  480
GSGGGSWFSS SLWSFVDSIP TAPASAAESP LVNRALERMS SFSKLRIHAM NTAVNGSASA  540
RRRSRNRGFF FISILGALCA VLWFLIGTVR VLGRSISS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-48	21	147	16	140	Stress-induced transcription factor NAC1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	38	47	KRKICKKRLK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847222	0.0	KC847222.1 Gossypium hirsutum NAC domain protein NAC45 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012482360.1	0.0	PREDICTED: NAC domain-containing protein 17-like isoform X3
TrEMBL	A0A0D2PPB5	0.0	A0A0D2PPB5_GOSRA; Uncharacterized protein
STRING	Gorai.005G076200.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34190.1	1e-114	NAC domain containing protein 17

Link Out ? help Back to Top
Phytozome	Gorai.005G076200.4

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]