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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G076200.1 | ||||||||
Common Name | B456_005G076200, LOC105797008 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 632aa MW: 70988.4 Da PI: 4.7961 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.9 | 8.2e-53 | 21 | 147 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 ppGfrFhPtdeelv +yLk+k+ +k+l+l ++i+e+d+yk +P++Lp + +k+++++w+fF++rd+ky++g r+nrat +gyWkatgkd+ Gorai.005G076200.1 21 PPGFRFHPTDEELVLYYLKRKICKKRLKL-DIIRETDVYKRDPEELPgQsVLKNGDRQWFFFCPRDRKYPNGARSNRATIHGYWKATGKDR 110 8****************************.99**************96447788999********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ ++++vg+kktLvfy+grap+ge+tdWvmhey+l Gorai.005G076200.1 111 SITC-NSRVVGIKKTLVFYRGRAPNGERTDWVMHEYTL 147 ****.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-59 | 17 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.462 | 20 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-27 | 21 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 632 aa Download sequence Send to blast |
MKVTATAVTV DSGFGDDQVW PPGFRFHPTD EELVLYYLKR KICKKRLKLD IIRETDVYKR 60 DPEELPGQSV LKNGDRQWFF FCPRDRKYPN GARSNRATIH GYWKATGKDR SITCNSRVVG 120 IKKTLVFYRG RAPNGERTDW VMHEYTLDEE ELKRCQNVKD YYALYKLYKK SGPGPKNGEQ 180 YGAPFKEEAW DDEEYSSIPL DTITPVKPPN EVIPDDNVKA NVQSESPLSD IEEFMRQFAD 240 EPALPQPQAY HSHVLPQVVS AEDTQSTLLD PSPRGVLFPE QLTVLHGQAS FEFPESPISQ 300 LLLQEAPEVT PVTDHLDQVP QLCEEDFLEI DDLLGPEPLI SNIEKPVENK QFNELDGLSE 360 FDLYHDAAMF LQDMGSIDQG TVPFLYDNMI NQVSYQLEPQ SNISLMNQQY LPHSNLNLID 420 KQWQNQANAN MMEQHLQPQL NASGGNMLNQ MVYQSGPNIN SMDQQLVLHS SVDQVDYHGQ 480 NQQLQMDQIN GALWTHDQNG DVFIPSGSNL GNASPTSGFV NNGPKQDQGN KNDGSGGGSW 540 FSSSLWSFVD SIPTAPASAA ESPLVNRALE RMSSFSKLRI HAMNTAVNGS ASARRRSRNR 600 GFFFISILGA LCAVLWFLIG TVRVLGRSIS S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-48 | 21 | 147 | 16 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 38 | 47 | KRKICKKRLK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847222 | 0.0 | KC847222.1 Gossypium hirsutum NAC domain protein NAC45 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012482358.1 | 0.0 | PREDICTED: NAC domain-containing protein 17-like isoform X1 | ||||
TrEMBL | A0A0D2N913 | 0.0 | A0A0D2N913_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G076200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2812 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 1e-110 | NAC domain containing protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G076200.1 |
Entrez Gene | 105797008 |
Publications ? help Back to Top | |||
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