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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.005G068900.1 |
Common Name | B456_005G068900, LOC105796924 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
MYB |
Protein Properties |
Length: 302aa MW: 34233 Da PI: 6.7076 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.005G068900.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 59.5 | 7.2e-19 | 24 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT eEd +l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
Gorai.005G068900.1 24 RGPWTVEEDFKLINYIAIHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 71
89********************************************97 PP
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2 | Myb_DNA-binding | 51.4 | 2.5e-16 | 77 | 120 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
Gorai.005G068900.1 77 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 120
7999******************.*********.***********96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 302 aa
Download sequence Send
to blast |
MDGKKRGCTG NVQSEEDHEM DLIRGPWTVE EDFKLINYIA IHGEGRWNSL ARCAGLKRTG 60 KSCRLRWLNY LRPDIRRGNI TLEEQLLILE LHSRWGNRWS KIAQHLPGRT DNEIKNYWRT 120 RVQKHAKQLK CDVNSKQFKD TMRYLWMPRL VERIQAAAGS TTTTTTTTAV VPSASVMGKD 180 FSTHVTPSYT SENSSTATAA SSESFEAQVS PVSDLTNCYN NGFQVTNNNN PNPDYNFQAC 240 SSQVDYYEHS LSAANYYNHG DGGCLDLQTN NYPMLDGADL SDNLLNAEDF LFLQQQFNFN 300 M*
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Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}. |