PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G066300.1
Common NameB456_005G066300, LOC105796898
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 609aa    MW: 67667.4 Da    PI: 4.6039
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G066300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2807e-862316022374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl...fsevs 88 
                           lLl++Ae v  ++ e a++lL++   ++s++g+p+qR++ yf eAL++++ r ++ + +k+l+ ++  +   ++ +a   +    + ++
  Gorai.005G066300.1 231 AALLLAAAEKVGYQQYESASRLLKQCDYMSSKTGNPVQRVVYYFSEALREKIEReTGRSSSKSLKWKPLCNF-DTDMIALNPTvlaCHGAF 320
                         579***************************************************666677777776666533.3444444333455899** PP

                GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                         P+ ++s+++  qaI+e v+++++vHiiD+ i++G+QW  L+qaLasR+       l+iT+v+    + k+ +  tg+rL++fA++lgvpf 
  Gorai.005G066300.1 321 PFGQVSQFAGIQAIVENVAEANKVHIIDLAIKNGIQWTILIQALASRQheYRLELLKITAVAT---EAKDLIDGTGKRLSSFAQSLGVPFA 408
                         ************************************************5555679********...469999******************* PP

                GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                         f+v++++++ dl+ + ++++ +E+++   +++  ++l+ +  +e+    ++k+++ ++P ++vv+e ea+hns+ F++rf+e l y+sa f
  Gorai.005G066300.1 409 FKVVMVSDMLDLKEDFFELDAEETIVAYAAFAFRSMLATPNRIEN----IMKVLRVMNPCLMVVTEVEANHNSPIFVNRFIEVLFYFSAYF 495
                         *************************************77777777....****************************************** PP

                GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgsl 358
                         d++++ + ++s++r  +E +++g  i+n+va+eg++r+ r+ ++  Wr+ + + G+++++ls +   qa+l+l++++ +   +++ + ++l
  Gorai.005G066300.1 496 DCIATCMEQDSKNREILESVFFGDGIRNMVAAEGTDRKVRNVKFDVWRAFFVRYGMEEAELSMSSKYQADLILKTFAcGTCCTLDMNGKCL 586
                         *****************************************************************************9999********** PP

                GRAS 359 vlgWkdrpLvsvSaWr 374
                         + gWk+ p+ s+S+W+
  Gorai.005G066300.1 587 LVGWKGTPMHSISVWK 602
                         ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.145204581IPR005202Transcription factor GRAS
PfamPF035142.4E-83231602IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MGNDVFSFVD LNVYGAPDKL SSSNNEFESS DGGNKGKAGG FYGVEDWGET GGIDSLPSDY  60
GFYGDASMEA SGFSFFKQDH QQQQQQQQEQ QSFIEYGLHN GVSFNAQSPL IQACFDEIAE  120
LGGINNGVYE DIGEAKKGKQ YPGLSSLGLL NNYGNGFKRL NGERKTDDDI TVSDTQDEDR  180
KLSTEEVMRV AGEMFLKSCG QTIDGISGVD HPFSLSFSGF SDRETRDIEL AALLLAAAEK  240
VGYQQYESAS RLLKQCDYMS SKTGNPVQRV VYYFSEALRE KIERETGRSS SKSLKWKPLC  300
NFDTDMIALN PTVLACHGAF PFGQVSQFAG IQAIVENVAE ANKVHIIDLA IKNGIQWTIL  360
IQALASRQHE YRLELLKITA VATEAKDLID GTGKRLSSFA QSLGVPFAFK VVMVSDMLDL  420
KEDFFELDAE ETIVAYAAFA FRSMLATPNR IENIMKVLRV MNPCLMVVTE VEANHNSPIF  480
VNRFIEVLFY FSAYFDCIAT CMEQDSKNRE ILESVFFGDG IRNMVAAEGT DRKVRNVKFD  540
VWRAFFVRYG MEEAELSMSS KYQADLILKT FACGTCCTLD MNGKCLLVGW KGTPMHSISV  600
WKFLEANV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-3823860126377Protein SCARECROW
5b3h_D2e-3823860126377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6146091e-50JX614609.1 Gossypium hirsutum clone NBRI_GE58134 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482188.10.0PREDICTED: DELLA protein RGL2-like
TrEMBLA0A0D2SBU60.0A0A0D2SBU6_GOSRA; Uncharacterized protein
STRINGGorai.005G066300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157861014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.18e-57RGA-like 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]