PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G047800.1

Common Name

B456_005G047800, LOC105796706

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 172aa MW: 19227.8 Da PI: 8.6268

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G047800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00014	22	44	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Gorai.005G047800.1 22 YTCSFCERGFRSAQALGGHMNVH 44 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.45E-7	19	49	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.4E-4	20	48	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.1E-5	22	45	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.007	22	44	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.406	22	49	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	24	44	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MATNQGFEED YLSGFSWPPR SYTCSFCERG FRSAQALGGH MNVHRRDKAR LRQLPPPMDH 60 HGQSPFLNLN LNLNFNPNPN FSSSSLVSSP LPCEMKKRLV NETVVDSTDS TSMKGAKPLF 120 GVKEFKDYGC NNKFMKKKKK NVSLDLGLDL EMGVGSDSKE DLDLELRLGY T*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	5e-13	17	44	2	29	superman protein
2l1o_A	5e-13	17	44	2	29	Transcriptional regulator SUPERMAN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012481950.1	1e-125	PREDICTED: transcriptional regulator SUPERMAN-like isoform X1
TrEMBL	A0A0D2N7Z4	1e-123	A0A0D2N7Z4_GOSRA; Uncharacterized protein
STRING	Gorai.005G047800.1	1e-124	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8109	24	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23130.1	2e-24	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Gorai.005G047800.1
Entrez Gene	105796706

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]