PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G027500.1
Common NameB456_005G027500, LOC105796482
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 495aa    MW: 55462.8 Da    PI: 5.0433
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G027500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.13.3e-34241142101
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k++++++d+++++++sws+n++sfvv+++ +fa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F k++++
  Gorai.005G027500.1  24 FLMKTFDMVDDSSTDDIVSWSSNKKSFVVWNPPDFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFVKDQRH 105
                         9****************************************************************999.........************** PP

                         XXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkk 101
                         ll++i+r+k
  Gorai.005G027500.1 106 LLKNIHRRK 114
                         *******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.4E-3720113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.2E-5920113IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.07E-3520113IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-182447IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.9E-3024113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-186274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-187587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MDPTAPSASV VGGGGGGGGG PAPFLMKTFD MVDDSSTDDI VSWSSNKKSF VVWNPPDFAR  60
LLLPTYFKHN NFSSFIRQLN TYGFRKIDPE RWEFANEDFV KDQRHLLKNI HRRKPIHSHS  120
NPQGSLIDHE RAGYEEEIEK LSREKAALEA DVLRSEQERS ALKHQVEELT QQADQMERRQ  180
DTLFNFLEKA LQDPAFAEHL FRRIESMDDV VAYNKKRRLP QIDQTKPVGD HSLLDNKSSS  240
TPEFGNVVHL DFSNKLRLEL SSAVSEINLV SQSTQSSNED GESPQRRVSQ GEPKDDNIRP  300
QGLLFTPETL DISDTGTSFT FNMDSSFSQR VSMNESPAVH SLQQRLSSNE EPDSHISCQL  360
NLTLASSSLQ VNKSPSLTRM SQPSWEIGKV SESRSNANSK DSDSGPFHNS RNMIDGETTL  420
SSSKEGPNTN QEPAAAPVRV NDVFWEQFLT ERPGSSDNEE ASSNYRANPY EEQDDKRSGH  480
GLARNTKNIE QLSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-201111316129Heat shock factor protein 1
5d5v_B2e-201111316129Heat shock factor protein 1
5d5v_D2e-201111316129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7486160.0KJ748616.1 Gossypium hirsutum HSF13 (HSF13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481655.10.0PREDICTED: heat stress transcription factor A-5-like isoform X1
RefseqXP_016722411.10.0PREDICTED: heat stress transcription factor A-5-like
SwissprotQ94BZ51e-172HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A0D2REN80.0A0A0D2REN8_GOSRA; Uncharacterized protein
TrEMBLA0A1U8M6H20.0A0A1U8M6H2_GOSHI; heat stress transcription factor A-5-like
STRINGGorai.005G027500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101342433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-174HSF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]