PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G022400.4 | ||||||||
Common Name | B456_005G022400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 325aa MW: 35609.6 Da PI: 9.0199 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.2 | 2.3e-06 | 270 | 304 | 4 | 40 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STC CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsK 40 +h+ +Er RR++i +++ L++l+P + ++ K +K Gorai.005G022400.4 270 SHSLAERVRREKISERMKFLQDLVPGC---NKVKsINK 304 8*************************8...66555776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.14E-8 | 264 | 302 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.93E-6 | 264 | 304 | No hit | No description |
PROSITE profile | PS50888 | 10.645 | 266 | 318 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.7E-8 | 269 | 305 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MEKDKAFMSE ELKNRTTTRQ QQPAWNPCGF MTEMSTNELN CGTEQVGNYF FNPNWENSMD 60 QSDPFESALS SMVSSPAASN VGSGENVMMR ELIGKLWNIC NSKDIITNST NASSYSTPLN 120 SPPFSTDPGF AERAARFSCF GGLNDPLRDS LKLSGHVNGT QTIKNSTLSR SSSPENAESG 180 VSKEESSVSE QLPGGNNKKR KSIPRGKAKE TPSPATVDAK VAAENNDESN AKRSKQNGTV 240 KASNKEDSKP PEPPKDYIHV RARRGQATDS HSLAERVRRE KISERMKFLQ DLVPGCNKVK 300 SINKTCVTLK TFMSDKTMFV SGDR* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250|UniProtKB:Q8GY61, ECO:0000269|PubMed:24130508}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012481609.1 | 0.0 | PREDICTED: transcription factor bHLH62 | ||||
Swissprot | Q9FJL4 | 4e-53 | BH078_ARATH; Transcription factor bHLH78 | ||||
Swissprot | Q9SRT2 | 2e-53 | BH062_ARATH; Transcription factor bHLH62 | ||||
TrEMBL | A0A0D2R852 | 0.0 | A0A0D2R852_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G022400.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 7e-51 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G022400.4 |
Publications ? help Back to Top | |||
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