PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G022400.1
Common NameB456_005G022400
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 468aa    MW: 51739.8 Da    PI: 7.7613
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G022400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.4e-09270317455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Gorai.005G022400.1 270 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 317
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.29E-11264321No hitNo description
SuperFamilySSF474593.14E-17264335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-17266334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663266316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-6270317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10272322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MEKDKAFMSE ELKNRTTTRQ QQPAWNPCGF MTEMSTNELN CGTEQVGNYF FNPNWENSMD  60
QSDPFESALS SMVSSPAASN VGSGENVMMR ELIGKLWNIC NSKDIITNST NASSYSTPLN  120
SPPFSTDPGF AERAARFSCF GGLNDPLRDS LKLSGHVNGT QTIKNSTLSR SSSPENAESG  180
VSKEESSVSE QLPGGNNKKR KSIPRGKAKE TPSPATVDAK VAAENNDESN AKRSKQNGTV  240
KASNKEDSKP PEPPKDYIHV RARRGQATDS HSLAERVRRE KISERMKFLQ DLVPGCNKVT  300
GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPRMDVNMET LLSKDMFQSR GLLPHAVYSM  360
EPTFPFGYQP QQGLALNNGI ANTTSQQGFQ LPQVNGFIDG NPQVGSIWED DLQSIVQMGF  420
GQNQAQCYQG KSIIQHPNYT RIRVGITQSI DPFFVWCRFN SSRPSEN*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481609.10.0PREDICTED: transcription factor bHLH62
SwissprotQ9SRT21e-94BH062_ARATH; Transcription factor bHLH62
TrEMBLA0A0D2N7240.0A0A0D2N724_GOSRA; Uncharacterized protein
STRINGGorai.005G022400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.12e-91bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]