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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G020600.1 | ||||||||
Common Name | B456_005G020600, LOC105796423 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 258aa MW: 29845.3 Da PI: 5.1914 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 87.7 | 2.1e-27 | 3 | 132 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 GfrF+Ptdee++ e L +kv+g++ + ++++i + +iy++eP++L+ + ++ +++e y++++r++ + + ++ +g Wkat + Gorai.005G020600.1 3 LTGFRFSPTDEEVI-EILSQKVSGNTsMAAFDFIIQKNIYDFEPQELHgSesTIGLNKNERYYYCRRESDS------REVMGRGWWKATSH 86 57************.88*****99997778899**************84344555588899*****98753......447889******** PP NAM 89 dkevlskkgelvglkktLvfy......kgrapkgektdWvmheyrl 128 k+v s +ge++g k+ L+f+ +g+++ + ktdW+mhey l Gorai.005G020600.1 87 VKAVSSPNGEVMGYKRPLTFHrfkdniQGNRKGAIKTDWIMHEYGL 132 *********************88877779999999*********76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 31.804 | 2 | 147 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.4E-30 | 3 | 147 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-15 | 4 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MVLTGFRFSP TDEEVIEILS QKVSGNTSMA AFDFIIQKNI YDFEPQELHG SESTIGLNKN 60 ERYYYCRRES DSREVMGRGW WKATSHVKAV SSPNGEVMGY KRPLTFHRFK DNIQGNRKGA 120 IKTDWIMHEY GLQSIHTEWR LCKIKYKGKE KVEEDMTPME KTFGHSNNKT LLTSFEAKDG 180 SSSSSNSIAP MQLELAFEQP PLTQPILPVN NDINYNYDSY CWSNSNMMLY EDHQLADQLD 240 TLSEQPFSDL WSWDDYH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-14 | 5 | 150 | 18 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX586241 | 2e-53 | JX586241.1 Gossypium hirsutum clone NBRI_GE20018 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012481594.1 | 0.0 | PREDICTED: putative NAC domain-containing protein 94 | ||||
TrEMBL | A0A0D2S9P5 | 0.0 | A0A0D2S9P5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G020600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16224 | 6 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 3e-19 | NAC domain containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G020600.1 |
Entrez Gene | 105796423 |
Publications ? help Back to Top | |||
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