PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G016700.1
Common NameB456_005G016700, LOC105796387
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family FAR1
Protein Properties Length: 266aa    MW: 30620.8 Da    PI: 7.2826
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G016700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR190.52.3e-28107194291
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                         fYn+YA++vGF +r+sk ++s+++g+ + r +vC+keg+r ++k++  k  r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p
  Gorai.005G016700.1 107 FYNAYATRVGFIIRVSKLSRSRHDGSAIGRALVCNKEGFRMPDKRE--KIMRHRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLTP 194
                         ******************************************9988..99*************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-25107194IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MRESLNFEFL LGYIYIYIYI YFFTVEFWVH GDVNGGIMLN PVQAEASSSM DNDNETGENP  60
VEGIFQPGLN EKLDRTSPQR DDIPEIVLAD EPYVGQEFES EASAHAFYNA YATRVGFIIR  120
VSKLSRSRHD GSAIGRALVC NKEGFRMPDK REKIMRHRAE TRVGCRAMIL VRKVSSGKWV  180
VTKFVKEHTH PLTPGKGRTD CIYDQYPNEH DKIRELTHQL AIEKKRSATY KRQLELIFEQ  240
IDECNKSLSK KIQHIVDSVR EIENK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5794471e-123JX579447.1 Gossypium hirsutum clone NBRI_GE11686 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481542.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 12-like isoform X1
TrEMBLA0A0D2RE300.0A0A0D2RE30_GOSRA; Uncharacterized protein
STRINGGorai.005G016700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73022539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-105FAR1 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]