PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 1184aa MW: 136426 Da PI: 6.1598

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G015100.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	93.7	2.8e-29	14	369	3	374
GRAS 3 elLlecAeavss.gdlelaqalLarlselaspdg...dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 +lLl+cAea+++ gdl+ a+a+L ++ la + + ++++yf+ ALa+r ++ l+p + +++++ ++ P Gorai.005G015100.2 14 RLLLSCAEAIEEyGDLKSADAFLHNILILADQIPnwfQDEIKVVKYFADALARRAYG--------LHPAS----------SFFTFPVDPLP 86 79*******989******99888544431146788************9........22222..........2344457889 PP GRAS 90 ilkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176 ++ N I + v+g+ +r+H+iDf+i + + l++L + +++p +R+ +p +++ + ++ e L+k Aee++v++ Gorai.005G015100.2 87 YYHYNSYHINGVIKKVVDGAlmgsRRLHVIDFSIPYYRFQNSVLRTLPNFSGDPLPVRVSYTLPPFLKKHVKFSRQMEILTKDAEEVNVKL 177 ***********999998888879*******9999********************9999999999************9 PP GRAS 177 e..fnvlvakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262 e +v++ ++l++++ e+++k+ +E+++V ++l +l++e ++e L +k+++P++v++ + ++h++++Fl+ f ++++ Gorai.005G015100.2 178 EneLKVVYGNSLAEVDECEIDFKRrrdDEMVVVYYKFKLDKLVREAKAMER----ELARLKEINPTIVIMLDFYSNHSDSNFLTCFKDSFQ 264 7225667888********99999************99999988....9******************************* PP GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve 352 y + +d +++ ++ +E e g+e +n a eg++ + rh +l +W++ +++aGF+ +pl+++ + ++ + ++ Gorai.005G015100.2 265 YSLKTLDYWAEL-------DHYLEGE-YGWE-CNREAGEGNNIIRRHPSLTEWQHLFSMAGFSRIPLNHRKDNLSFEDNPSFAdNSLLEIM 346 *****877.......7888888.5666.677899*************************999887777777777733334444 PP GRAS 353 .eesgslvlgWkdrpLvsvSaWr 374 ee+++l+lg k+rp++++SaW+ Gorai.005G015100.2 347 gEEEECLILGYKQRPMFFLSAWK 369 799*****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	15.741	1	347	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.6E-27	14	369	IPR005202	Transcription factor GRAS
SMART	SM00614	2.3E-12	622	672	IPR003656	Zinc finger, BED-type
PROSITE profile	PS50808	9.308	622	676	IPR003656	Zinc finger, BED-type
Pfam	PF02892	6.1E-5	625	665	IPR003656	Zinc finger, BED-type
SuperFamily	SSF57667	1.55E-5	625	674	No hit	No description
SuperFamily	SSF53098	2.2E-39	742	1171	IPR012337	Ribonuclease H-like domain
Pfam	PF14372	1.6E-12	950	1041	IPR025525	hAT-like transposase, RNase-H fold
Pfam	PF05699	4.4E-18	1092	1170	IPR008906	HAT, C-terminal dimerisation domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1184 aa Download sequence Send to blast
MASFFDIDTD TALRLLLSCA EAIEEYGDLK SADAFLHNIL ILADQIPNWF QDEIKVVKYF 60 ADALARRAYG LHPASSFFTF PVDPLPYYHY NSYHINGVIK KVVDGALMGS RRLHVIDFSI 120 PYYRFQNSVL RTLPNFSGDP LPVRVSYTLP PFLKKHVKFS RQMEILTKDA EEVNVKLENE 180 LKVVYGNSLA EVDECEIDFK RRRDDEMVVV YYKFKLDKLV REAKAMEREL ARLKEINPTI 240 VIMLDFYSNH SDSNFLTCFK DSFQYSLKTL DYWAELDHYL EGEYGWECNR EAGEGNNIIR 300 RHPSLTEWQH LFSMAGFSRI PLNHRKDNLS FEDNPSFADN SLLEIMGEEE ECLILGYKQR 360 PMFFLSAWKP KVEDGHFDSN STNHKFGQGF NPNPLPRQPL QPFPEGLKLN RLAALAEIHD 420 ISKYLSCKYK LSLTLTLASK VNNMNETILD PNKKQVFFIQ DNYCYTKDMT SYYFMLDSKD 480 KISGRPLIIE KAFESRDGYH FEPSLSKVED YRDSTLQGYN IDVAVAICLQ NRHTSDEVYI 540 VALYWPPTES EISKSLTLHI FDDLKHMKTT FVTVKVQGPE FKFQEECISS TPTSSNTAMP 600 LEIAENAHIE QIVETKRNKQ RKSWSKVWVD FDKFEEHGKQ VAKCKHCLKV FTGSSKSGTT 660 HLNNHSKVCP GKKKQNQESQ LILPVDTNER SSTFDQETSH LDLVKMVIRH QYPLDLAGQE 720 AFKNFVKGLQ PMYEFQSRDK FLWKNNHGKT AYCCLIAHFI DDGWELKIKI LGLRKLEHVY 780 DTKVVGGIIG SFVSEWNISK KVCSITVDNS FLNDGMVHQI RENCVSEQGS LSTAHWFISF 840 TLLEDGFREM DTILSKLWKS IEYVTETTHG KLNFQEAVNQ VKLQGGKSWD ELSFKLESDS 900 DILDSALRSR EIFCKLEQID DNFMLNLSKE EWDKVVTLQS CFKCFDDIKG TQSLTANLYF 960 PKLCNMYEEF GQLKKSNHPF VILMKRKFDN YWSLCNVAFT IAAALDPRLK FRFTCNETYD 1020 LESMMKLKRF RKVLMDVYFD YANEAKNLSA SSSVLDDSNS LTAETTKDCI VSYFSKFVSA 1080 SNVKEVASQK SELDCYLEET LLPSDADILG WWRINSQRFP TLAKMARDFL AIPVSVSSPC 1140 SNVSAMTINP AYSSLDPESM EALVCSQNWL ESTKESKSNF DFV*

Sequence ? help Back to Top

Protein Sequence Length: 1184 aa Download sequence Send to blast

MASFFDIDTD TALRLLLSCA EAIEEYGDLK SADAFLHNIL ILADQIPNWF QDEIKVVKYF  60
ADALARRAYG LHPASSFFTF PVDPLPYYHY NSYHINGVIK KVVDGALMGS RRLHVIDFSI  120
PYYRFQNSVL RTLPNFSGDP LPVRVSYTLP PFLKKHVKFS RQMEILTKDA EEVNVKLENE  180
LKVVYGNSLA EVDECEIDFK RRRDDEMVVV YYKFKLDKLV REAKAMEREL ARLKEINPTI  240
VIMLDFYSNH SDSNFLTCFK DSFQYSLKTL DYWAELDHYL EGEYGWECNR EAGEGNNIIR  300
RHPSLTEWQH LFSMAGFSRI PLNHRKDNLS FEDNPSFADN SLLEIMGEEE ECLILGYKQR  360
PMFFLSAWKP KVEDGHFDSN STNHKFGQGF NPNPLPRQPL QPFPEGLKLN RLAALAEIHD  420
ISKYLSCKYK LSLTLTLASK VNNMNETILD PNKKQVFFIQ DNYCYTKDMT SYYFMLDSKD  480
KISGRPLIIE KAFESRDGYH FEPSLSKVED YRDSTLQGYN IDVAVAICLQ NRHTSDEVYI  540
VALYWPPTES EISKSLTLHI FDDLKHMKTT FVTVKVQGPE FKFQEECISS TPTSSNTAMP  600
LEIAENAHIE QIVETKRNKQ RKSWSKVWVD FDKFEEHGKQ VAKCKHCLKV FTGSSKSGTT  660
HLNNHSKVCP GKKKQNQESQ LILPVDTNER SSTFDQETSH LDLVKMVIRH QYPLDLAGQE  720
AFKNFVKGLQ PMYEFQSRDK FLWKNNHGKT AYCCLIAHFI DDGWELKIKI LGLRKLEHVY  780
DTKVVGGIIG SFVSEWNISK KVCSITVDNS FLNDGMVHQI RENCVSEQGS LSTAHWFISF  840
TLLEDGFREM DTILSKLWKS IEYVTETTHG KLNFQEAVNQ VKLQGGKSWD ELSFKLESDS  900
DILDSALRSR EIFCKLEQID DNFMLNLSKE EWDKVVTLQS CFKCFDDIKG TQSLTANLYF  960
PKLCNMYEEF GQLKKSNHPF VILMKRKFDN YWSLCNVAFT IAAALDPRLK FRFTCNETYD  1020
LESMMKLKRF RKVLMDVYFD YANEAKNLSA SSSVLDDSNS LTAETTKDCI VSYFSKFVSA  1080
SNVKEVASQK SELDCYLEET LLPSDADILG WWRINSQRFP TLAKMARDFL AIPVSVSSPC  1140
SNVSAMTINP AYSSLDPESM EALVCSQNWL ESTKESKSNF DFV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX583793	1e-33	JX583793.1 Gossypium hirsutum clone NBRI_GE16930 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012481509.1	0.0	PREDICTED: uncharacterized protein LOC105796367 isoform X2
TrEMBL	A0A0D2R7M9	0.0	A0A0D2R7M9_GOSRA; Uncharacterized protein
STRING	Gorai.005G015100.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	2e-28	GRAS family protein

Link Out ? help Back to Top
Phytozome	Gorai.005G015100.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]