PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G014200.1

Common Name

B456_005G014200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 393aa MW: 45629.5 Da PI: 7.335

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G014200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	86.2	5.3e-27	11	356	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqR.laayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 +lLl+cA+a+++gdl++a+a+L + la ++ + q +++yf+ AL +r ++ l+p ++ ++ + ++ P++ Gorai.005G014200.1 11 NLLLSCAKAIEDGDLKRADACLHYILILADKRPYSYQTiVVKYFADALVRRAYG--------LHPASS----------YFAFPVDPAPYYH 83 79************************99999777762679********........322222..........2223345566666 PP GRAS 93 fshltaNqaIle....avegeervHiiDfdisqGlQWp.aLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178 N I + a+ g++r+H iDf+i + + + l++L + + p s+R+ + +p ++ l++ e L+k A +++++ e Gorai.005G014200.1 84 YNSCRINGVIKKvigyALMGNRRLHLIDFSIPYYYRFQnSVLRTLPNFFGYPLSVRVSYILPPFLKEYVDLSRQMEFLTKDAVNVKLEDEL 174 666666655554112278889********99996379*9999999*****99999999***************** PP GRAS 179 nvlvakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 +v++ ++l++++ e+++k+ +E+++V ++l++l+++ ++e L +k+++P++v++ + ++h++++Fl+ f ++l+y + Gorai.005G014200.1 175 KVVYGNSLAEVDECEIDFKRrrdDEMVVVYYKFKLEKLVRDAKAMER----ELVRLKEINPTIVIMLDFYSNHTHSNFLTCFKDSLQYSLK 261 **************99999************99888888....8999******************************** PP GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak...qaklllrkvksdgyrveee 354 d +++ +++ k+ e +n+ a eg++ + r+ tl +W++ +++aGF+ +pl+++ + + + ll+ ++ +e Gorai.005G014200.1 262 TVDYWAEL---HHNLGCKYGWE------CNIEAGEGNNIIRRQPTLTEWQHLFSMAGFSRIPLNHTKDNfsvEGEILLEIMG-------KE 336 *776...23333333333......7899999999999*****************98765432126677777777.......67 PP GRAS 355 sgslvlgWkdrpLvsvSaWr 374 +++l+lg k+ p++++SaW+ Gorai.005G014200.1 337 EECLILGYKGCPMFFLSAWK 356 9****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	16.408	1	340	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.8E-24	11	356	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MASSFSDTAL NLLLSCAKAI EDGDLKRADA CLHYILILAD KRPYSYQTIV VKYFADALVR 60 RAYGLHPASS YFAFPVDPAP YYHYNSCRIN GVIKKVIGYA LMGNRRLHLI DFSIPYYYRF 120 QNSVLRTLPN FFGYPLSVRV SYILPPFLKE YVDLSRQMEF LTKDAVNVKL EDELKVVYGN 180 SLAEVDECEI DFKRRRDDEM VVVYYKFKLE KLVRDAKAME RELVRLKEIN PTIVIMLDFY 240 SNHTHSNFLT CFKDSLQYSL KTVDYWAELH HNLGCKYGWE CNIEAGEGNN IIRRQPTLTE 300 WQHLFSMAGF SRIPLNHTKD NFSVEGEILL EIMGKEEECL ILGYKGCPMF FLSAWKPKVE 360 DGHYNSNSTS HKFGQAFYTF FFHSIELLNV KI*

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MASSFSDTAL NLLLSCAKAI EDGDLKRADA CLHYILILAD KRPYSYQTIV VKYFADALVR  60
RAYGLHPASS YFAFPVDPAP YYHYNSCRIN GVIKKVIGYA LMGNRRLHLI DFSIPYYYRF  120
QNSVLRTLPN FFGYPLSVRV SYILPPFLKE YVDLSRQMEF LTKDAVNVKL EDELKVVYGN  180
SLAEVDECEI DFKRRRDDEM VVVYYKFKLE KLVRDAKAME RELVRLKEIN PTIVIMLDFY  240
SNHTHSNFLT CFKDSLQYSL KTVDYWAELH HNLGCKYGWE CNIEAGEGNN IIRRQPTLTE  300
WQHLFSMAGF SRIPLNHTKD NFSVEGEILL EIMGKEEECL ILGYKGCPMF FLSAWKPKVE  360
DGHYNSNSTS HKFGQAFYTF FFHSIELLNV KI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX583793	2e-50	JX583793.1 Gossypium hirsutum clone NBRI_GE16930 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012481502.1	0.0	PREDICTED: uncharacterized protein LOC105796364
Refseq	XP_016728579.1	0.0	PREDICTED: uncharacterized protein LOC107939725
TrEMBL	A0A0D2RDY0	0.0	A0A0D2RDY0_GOSRA; Uncharacterized protein
STRING	Gorai.005G014200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM36202	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	4e-30	GRAS family protein

Link Out ? help Back to Top
Phytozome	Gorai.005G014200.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]