PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G013300.1
Common NameB456_005G013300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 451aa    MW: 51382.3 Da    PI: 4.4054
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G013300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.51.1e-1871543128
                 NAM   3 pGfrFhPtdeelvveyLkkk.vegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgk................. 72 
                         +G+ F+P+++ l+  yL+++ ++g++  ++++i+   di++++PwdLp   +++ +++e +f  ++  kya+++                 
  Gorai.005G013300.1   7 KGYGFNPSEQILI-GYLRERtTSGRDYLVQDIIDLShDICSYDPWDLPgcDSITPNDSERFFIYPKTYKYANSTskvigiptkqvpnsdqr 96 
                         799*******999.66666615555566667787767***********5336667899*************77655666665556665555 PP

                 NAM  73 ..rknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             nratk+g Wk +g   +v+s+  +++++g+k+ L f +++ p+  kt+ v+h+++l
  Gorai.005G013300.1  97 qpMINRATKNGKWKVSGVRVNVKSSdeTKQVIGIKTKLYFKHNNCPN--KTSCVLHQFEL 154
                         4455666***************998777788*********9666666..*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.1355172IPR003441NAC domain
SuperFamilySSF1019411.96E-187172IPR003441NAC domain
PfamPF023654.2E-77154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MNNLKLKGYG FNPSEQILIG YLRERTTSGR DYLVQDIIDL SHDICSYDPW DLPGCDSITP  60
NDSERFFIYP KTYKYANSTS KVIGIPTKQV PNSDQRQPMI NRATKNGKWK VSGVRVNVKS  120
SDETKQVIGI KTKLYFKHNN CPNKTSCVLH QFELVDIDPC QDKYFLGKVI MKEFKPTNIS  180
SNNLNDRISI PEVRVELGPE PLVETEVTNE YEWTQSEQTN EFITPYLVFD NENSIDDGNE  240
VISNYQSQIR VELGLEPLVE IEVAKEYGWT RGEQTNEFRT PCPVFNNENF IDDGNEVSSN  300
HQSQINMEQI RSLEVPNIGI EDQNQSYQNI GIDINDPTVP DEGSNQQNIV AVAENESSIL  360
PSNLHNLLID IILYFINQIE WSDLYKLCRF IDQQRAAGAE IEFPNLPPLD VAESSYSTDS  420
VRKRSAMEVE RLATGVETEL AQQQAKRSRL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481487.10.0PREDICTED: uncharacterized protein LOC105796356 isoform X2
TrEMBLA0A0D2N6L30.0A0A0D2N6L3_GOSRA; Uncharacterized protein
STRINGGorai.005G013300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1834949
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.11e-17NAC 014
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]