PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G013100.1

Common Name

B456_005G013100

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 320aa MW: 36442.8 Da PI: 4.4961

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G013100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	60.9	4.1e-19	7	154	3	128
NAM 3 pGfrFhPtdeelvveyLkkk.vegkkleleevikev.diykvePwdLpk..kvkaeekewyfFskrdkkyatgk................. 72 +G+ F+P+++ l+ yL+ + + g++ ++++i+ di++++PwdLp+ +++ +++e +f ++ kya++k Gorai.005G013100.1 7 KGYGFNPSEQILI-GYLRDRtLFGRDYLVQDIIDLGhDICNYDPWDLPScdSITPSDSERFFIYPKTYKYANSKskvigtptgqvpkgeqw 96 799*****999.56665516677777777777657*******4346666899********986645555555556655555 PP NAM 73 ..rknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 nratk+g Wk +g + +v+s+ +++++g+k+ L f +++ p+ kt+W++ +++l Gorai.005G013100.1 97 qpMINRATKNGNWKVSGDQVDVKSSddTKQVIGIKTRLYFRHNSCPN--KTTWTLYQFEL 154 5555666************99777888*****9766666..******987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	23.161	5	172	IPR003441	NAC domain
SuperFamily	SSF101941	1.23E-20	7	172	IPR003441	NAC domain
Pfam	PF02365	2.0E-7	7	154	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MNNLKLKGYG FNPSEQILIG YLRDRTLFGR DYLVQDIIDL GHDICNYDPW DLPSCDSITP 60 SDSERFFIYP KTYKYANSKS KVIGTPTGQV PKGEQWQPMI NRATKNGNWK VSGDQVDVKS 120 SDDTKQVIGI KTRLYFRHNS CPNKTTWTLY QFELVGIDPC QDKYFLGKVI MKKPTNISSN 180 NIDDQISIPQ VQVELGSEPL VENEVTNEYG WTQSEQTYEF ITPCPVFDIN DGNEVISNHQ 240 SQINMELIRS LEAPNIGIED QNQSYRNIGI DINDRTVPDG SNQLNIVAVA ENESSMLPSN 300 LHDLIQMKWS DLYNLYGWC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017632581.1	0.0	PREDICTED: NAC domain-containing protein 86-like
TrEMBL	A0A0D2S9D6	0.0	A0A0D2S9D6_GOSRA; Uncharacterized protein
STRING	Gorai.005G013100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18349	4	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33060.2	6e-18	NAC 014

Link Out ? help Back to Top
Phytozome	Gorai.005G013100.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]