PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G012400.1

Common Name

B456_005G012400, LOC105796355

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 156aa MW: 17145.6 Da PI: 7.2898

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G012400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.4	0.00014	49	84	14	54
HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 d++ ++++ L++l+ + +K + a++L +A+ YI+ L Gorai.005G012400.1 49 DQVSERIAALQQLVSPY-----GKTDTASVLLEAMGYIRFL 84 78999*******999.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.69	35	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.72E-5	38	89	No hit	No description
SuperFamily	SSF47459	1.83E-10	44	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-7	45	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MQMQALCSCE EAIDIGTMME NKRNPFSVDH TGFTSLASKR QKATKEKKDQ VSERIAALQQ 60 LVSPYGKTDT ASVLLEAMGY IRFLHEQVKV LSAPYLQTIP ANSLQDDDQY SLRNRGLCLA 120 PVSCTVGLAR SNGADIWAPV KTTSPKFDEV ISQFN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU265860	3e-81	GU265860.1 Gossypium hirsutum chromosome 14 SNP marker NG0207159 associated with bacterial blight resistance genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012481480.1	1e-114	PREDICTED: transcription factor bHLH113-like isoform X1
Refseq	XP_016684586.1	1e-114	PREDICTED: transcription factor bHLH113-like isoform X3
Swissprot	Q7XJU2	3e-58	BH153_ARATH; Transcription factor bHLH153
TrEMBL	A0A0D2N6J4	1e-113	A0A0D2N6J4_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8J2L5	1e-113	A0A1U8J2L5_GOSHI; transcription factor bHLH113-like isoform X3
STRING	Gorai.005G012400.1	1e-114	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3316	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05710.5	1e-60	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.005G012400.1
Entrez Gene	105796355

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]