PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G003900.2
Common NameB456_005G003900
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 273aa    MW: 30606.8 Da    PI: 5.3413
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G003900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY36.31.1e-111121581659
                         TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY  16 kgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         +gs   rsY+rCt++   gC+++k+v++ ++dp    ++Y g+H+++
  Gorai.005G003900.2 112 RGSYKRRSYFRCTHKtdqGCQATKQVQKLEDDPPKYATIYYGHHTCK 158
                         688899********99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007742.9E-11108159IPR003657WRKY domain
SuperFamilySSF1182908.76E-12112158IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-12112158IPR003657WRKY domain
PROSITE profilePS5081111.795112155IPR003657WRKY domain
PfamPF031061.9E-12113158IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MSWNTKKAIE ELVRGKELTK QLRDLLTKSL TDDGFVDSEG LVLKICDTFA NTLSLLTNSN  60
TTTTTAVPDY YYNDDLNDVS QKPTINITSD GRKSEDSGDS IKSPPSTLRD RRGSYKRRSY  120
FRCTHKTDQG CQATKQVQKL EDDPPKYATI YYGHHTCKNK LKPCHFMVDD STCNNDSSIL  180
LSFANDSTLT NKQGNDNPFF SSVKQESKED YKPISEITYN GSSSSDYLLS PHHHQLSTFD  240
LSSADMTVLQ SPDHDVLSDV VDSVHLDDLL QF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4384530.0KM438453.1 Gossypium aridum WRKY5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481333.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A0D2RDC50.0A0A0D2RDC5_GOSRA; Uncharacterized protein
STRINGGorai.005G003900.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.18e-16WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]