PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G003900.1
Common NameB456_005G003900, LOC105796276
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 308aa    MW: 34649.4 Da    PI: 6.5064
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G003900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.81.3e-24132193159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         +dDgy+WrKYGqK++ ++++prsY+rCt++   gC+++k+v++ ++dp    ++Y g+H+++
  Gorai.005G003900.1 132 VDDGYAWRKYGQKQILNANHPRSYFRCTHKtdqGCQATKQVQKLEDDPPKYATIYYGHHTCK 193
                         59***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-25118193IPR003657WRKY domain
PROSITE profilePS5081121.115127190IPR003657WRKY domain
SuperFamilySSF1182902.22E-24128193IPR003657WRKY domain
SMARTSM007744.9E-37132194IPR003657WRKY domain
PfamPF031067.7E-25133193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MSWNTKKAIE ELVRGKELTK QLRDLLTKSL TDDGFVDSEG LVLKICDTFA NTLSLLTNSN  60
TTTTTAVPDY YYNDDLNDVS QKPTINITSD GRKSEDSGDS IKSPPSTLRD RRGSYKRRKC  120
VDSRKKITSA LVDDGYAWRK YGQKQILNAN HPRSYFRCTH KTDQGCQATK QVQKLEDDPP  180
KYATIYYGHH TCKNKLKPCH FMVDDSTCNN DSSILLSFAN DSTLTNKQGN DNPFFSSVKQ  240
ESKEDYKPIS EITYNGSSSS DYLLSPHHHQ LSTFDLSSAD MTVLQSPDHD VLSDVVDSVH  300
LDDLLQF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-23132193869OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4384530.0KM438453.1 Gossypium aridum WRKY5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481333.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A0D2S8W50.0A0A0D2S8W5_GOSRA; Uncharacterized protein
STRINGGorai.005G003900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM167191012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-33WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]