PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 362aa MW: 40208 Da PI: 7.3635

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G288300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.7	9.4e-09	125	145	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G+Ck Gd+C FaHg Gorai.004G288300.1 125 ACPDFRK-GICKKGDSCEFAHG 145 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	6.437	72	109	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.3E-6	120	146	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.49E-5	120	149	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.479	121	147	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.4E-7	125	145	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.9E-5	125	147	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	13	155	178	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.615	155	179	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MMIGEPTRPN PTVKIPAWDP LNDPTSSYSS VNYNCNAPSS PCPVDYLSSL HRYLPSNDFE 60 SSDSLSEDSD LPVDAFSCDH FRMYEFKVRR CARGRSHDWT ECPYAHPGEK ARRRDPRKFH 120 YSGTACPDFR KGICKKGDSC EFAHGVFECW LHPARYRTQP CKDGTSCKRR VCFFAHTPEQ 180 LRLLPQQSPR GNGSSSGDLD YVGSPIRHRF DIVSSPTSIL ASPPLSPPSD SPPLSPSGSF 240 YSVSELAASM RSMQLGKSKM NGAGACSWGM QMGSGYGSPR GSTLRPGFCR SPSTPTRSGL 300 GQFDLWECNN GFEEEPAMER VESGRDLRAR MYAKLSKENS LDRLDPTEPE LDLDWVSELV 360 K*

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MMIGEPTRPN PTVKIPAWDP LNDPTSSYSS VNYNCNAPSS PCPVDYLSSL HRYLPSNDFE  60
SSDSLSEDSD LPVDAFSCDH FRMYEFKVRR CARGRSHDWT ECPYAHPGEK ARRRDPRKFH  120
YSGTACPDFR KGICKKGDSC EFAHGVFECW LHPARYRTQP CKDGTSCKRR VCFFAHTPEQ  180
LRLLPQQSPR GNGSSSGDLD YVGSPIRHRF DIVSSPTSIL ASPPLSPPSD SPPLSPSGSF  240
YSVSELAASM RSMQLGKSKM NGAGACSWGM QMGSGYGSPR GSTLRPGFCR SPSTPTRSGL  300
GQFDLWECNN GFEEEPAMER VESGRDLRAR MYAKLSKENS LDRLDPTEPE LDLDWVSELV  360
K*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.280	0.0	flower\|seedling\| flowering

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ526318	0.0	HQ526318.1 Gossypium herbaceum clone NBRI_D2_431 simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012477313.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 23-like
Swissprot	O82199	1e-118	C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBL	A0A0D2RC76	0.0	A0A0D2RC76_GOSRA; Uncharacterized protein
STRING	Gorai.004G288300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1249	27	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	1e-117	C3H family protein

Link Out ? help Back to Top
Phytozome	Gorai.004G288300.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Swain S,Singh N,Nandi AK Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant. J. Biosci., 2015. 40(1): p. 137-46 [PMID:25740148] Singh N,Swain S,Singh A,Nandi AK AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling. Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333 [PMID:29327969]