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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gorai.004G270300.1 |
| Common Name | B456_004G270300, LOC105792796 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
NAC |
| Protein Properties |
Length: 289aa MW: 32859.7 Da PI: 6.1089 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.004G270300.1 | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 157.7 | 4.7e-49 | 18 | 143 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93
pGfrFhPtdeelv +yL++kv++k+l++ e ike+diyk++P+dLpk+ +e+e+yfF++r +ky+++ r+nr+t+sg+Wkatg dk+v+
Gorai.004G270300.1 18 PGFRFHPTDEELVGFYLRRKVDNKPLTI-ELIKEIDIYKYDPSDLPKTGMVGENELYFFCRRGRKYRNSVRPNRVTESGFWKATGIDKPVF 107
9*************************99.89***************76667899************************************* PP
NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
s +ge++glkktLv+y+g+ kg+ktdW+mhe+rl
Gorai.004G270300.1 108 SVeGGEAIGLKKTLVYYRGSGGKGTKTDWMMHEFRL 143
9878899***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 289 aa
Download sequence Send
to blast |
MSMVRGTTPT VDEDVPLPGF RFHPTDEELV GFYLRRKVDN KPLTIELIKE IDIYKYDPSD 60
LPKTGMVGEN ELYFFCRRGR KYRNSVRPNR VTESGFWKAT GIDKPVFSVE GGEAIGLKKT 120
LVYYRGSGGK GTKTDWMMHE FRLPNPTMTA QDAEVWTICR FFKRHRKIKQ DWRQGAAKPA 180
STGNGNGVQG YESGSVGSSS HENYITLGSQ NVENYDDDDG EMVMDHMMND GSCRREWYHG 240
EMQCMASSSS PSSSFSTEND FFTNANWDEL KSIVDLDLDP FHFAKNHF*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-47 | 4 | 165 | 6 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-47 | 4 | 165 | 6 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-47 | 4 | 165 | 6 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-47 | 4 | 165 | 6 | 166 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 2e-47 | 4 | 165 | 6 | 166 | NAC domain-containing protein 19 |
| 4dul_B | 2e-47 | 4 | 165 | 6 | 166 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KC110645 | 0.0 | KC110645.1 Gossypium hirsutum NAC protein 10 (NAC10) mRNA, complete cds. |
| Publications
? help Back to Top |
- Paterson AH, et al.
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
Nature, 2012. 492(7429): p. 423-7
[PMID:23257886] - Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
Plant Signal Behav, 2016. 11(6): p. e1181245
[PMID:27159137] - Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
Nat Plants, 2016. 2: p. 16013
[PMID:27249348] - Shahnejat-Bushehri S, et al.
Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
Front Plant Sci, 2017. 8: p. 214
[PMID:28326087] - Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
Plant J., 2017. 92(6): p. 1106-1120
[PMID:29032592] - Ebrahimian-Motlagh S, et al.
JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
Front Plant Sci, 2017. 8: p. 2118
[PMID:29326734]
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