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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.004G269400.1 |
Common Name | B456_004G269400, LOC105792785 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
MYB |
Protein Properties |
Length: 319aa MW: 35636.6 Da PI: 5.2698 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.004G269400.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 50.4 | 5.2e-16 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+W++ Ed++l+ ++++G +W++ ++ g+ R++k+c++rw +yl
Gorai.004G269400.1 17 RGPWSPSEDLRLITFIQKHGHQNWRALPKQAGLLRCGKSCRLRWINYL 64
89******************************99************97 PP
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2 | Myb_DNA-binding | 50.9 | 3.6e-16 | 70 | 115 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T++E++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
Gorai.004G269400.1 70 RGNFTQDEEDTIIRVHATLGNK-WSKIASYLP-GRTDNEIKNVWNTHL 115
89********************.*********.************986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009751 | Biological Process | response to salicylic acid |
GO:0009753 | Biological Process | response to jasmonic acid |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 319 aa
Download sequence Send
to blast |
MAGKGRAPCC DKEKVKRGPW SPSEDLRLIT FIQKHGHQNW RALPKQAGLL RCGKSCRLRW 60 INYLRPDVKR GNFTQDEEDT IIRVHATLGN KWSKIASYLP GRTDNEIKNV WNTHLKKRLG 120 SMNGNADKKD ESMATSSSSS CVTSMSSFND KKTNEAFEMA VVSDKANHGS PSEEPEALSS 180 SSISSNVTNS NQVNVSNPEI QEGPLFNFTG CYYNTSEEVN KPETAFDIPL ESDLEFWNML 240 DSLVPFQPEG IQSHNETQCP DFGEAENKWL LYLEQELGLD PKDGGFEAEP LLVPETNGMG 300 TMGHYHNTVQ PYEPNSKQ*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: In nonelongating internodes, highly expressed in interfascicular fibers and xylem cells but not in parenchymatous pith cells. In elongating internodes, predominantly expressed in interfascicular fibers. Accumulates in the developing secondary xylem of roots. {ECO:0000269|PubMed:19122102}. |
Uniprot | TISSUE SPECIFICITY: Expressed at low levels in stems, roots and siliques (PubMed:9839469). Specifically expressed in fibers and vessels undergoing secondary wall thickening, especially in inflorescence stems (PubMed:19122102). {ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:9839469}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269|PubMed:19122102}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Slightly induced by UV light (PubMed:9839469). Triggered by salicylic acid and jasmonic acid (PubMed:16463103). Regulated by the SND1 close homologs NST1, NST2, VND6, and VND7 and their downstream targets MYB46 and MYB83 (PubMed:19122102, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:9839469}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AJ459154 | 1e-63 | AJ459154.1 Gossypium hirsutum partial myb125 gene, clone pGhMYB125. |
Publications
? help Back to Top |
- Paterson AH, et al.
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Noda S, et al.
The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63. Planta, 2015. 242(3): p. 589-600 [PMID:26070439] - Vargas L, et al.
Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants. Biotechnol Biofuels, 2016. 9: p. 139 [PMID:27390589]
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