PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G268400.1

Common Name

B456_004G268400, LOC105792773

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 323aa MW: 37027.4 Da PI: 4.6808

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G268400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.3	1e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeelv +yL++k++g+++el evi+evd+yk+ePwdLp k + +++ ewyf+s+rdkky++g+r+nrat+ gyWkatgkd Gorai.004G268400.1 6 LPPGFRFHPTDEELVAYYLHNKITGRPIEL-EVIPEVDLYKFEPWDLPdKsYLPSKDMEWYFYSPRDKKYPNGSRTNRATRGGYWKATGKD 95 79**************************.99**********95335666888***************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++v s ++++vg+kktLv+y+grap+g +t+Wvmheyrl Gorai.004G268400.1 96 RAVQS-QKRAVGIKKTLVYYRGRAPHGIRTNWVMHEYRL 133 9.9999*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.93E-64	3	150	IPR003441	NAC domain
PROSITE profile	PS51005	60.701	6	150	IPR003441	NAC domain
Pfam	PF02365	1.3E-28	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MAPMSLPPGF RFHPTDEELV AYYLHNKITG RPIELEVIPE VDLYKFEPWD LPDKSYLPSK 60 DMEWYFYSPR DKKYPNGSRT NRATRGGYWK ATGKDRAVQS QKRAVGIKKT LVYYRGRAPH 120 GIRTNWVMHE YRLLNSTLKD CYALCRVFKK NIQILPKEEE AVGNNNNVDK EKQLHGEETS 180 GNEIPKGRQV EIEDENLITS SSDLTQGTSY ETGMAMADDN QPPFTSDEAN SSANTISSSL 240 AMDFSSNLIQ AEGYTNVEYQ VPYPPLELED FPQINLSETK AEMMDEYMVY DKYKDYMNGS 300 LEEIFSLCSS QDISMPLYMH QD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-58	1	151	12	166	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-58	1	151	12	166	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-58	1	151	12	166	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-58	1	151	12	166	NO APICAL MERISTEM PROTEIN
3swm_A	5e-58	1	151	15	169	NAC domain-containing protein 19
3swm_B	5e-58	1	151	15	169	NAC domain-containing protein 19
3swm_C	5e-58	1	151	15	169	NAC domain-containing protein 19
3swm_D	5e-58	1	151	15	169	NAC domain-containing protein 19
3swp_A	5e-58	1	151	15	169	NAC domain-containing protein 19
3swp_B	5e-58	1	151	15	169	NAC domain-containing protein 19
3swp_C	5e-58	1	151	15	169	NAC domain-containing protein 19
3swp_D	5e-58	1	151	15	169	NAC domain-containing protein 19
4dul_A	4e-58	1	151	12	166	NAC domain-containing protein 19
4dul_B	4e-58	1	151	12	166	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012477006.1	0.0	PREDICTED: NAC domain-containing protein 86-like
TrEMBL	A0A0D2R4U9	0.0	A0A0D2R4U9_GOSRA; Uncharacterized protein
STRING	Gorai.004G268400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8123	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54330.1	1e-108	NAC domain containing protein 20

Link Out ? help Back to Top
Phytozome	Gorai.004G268400.1
Entrez Gene	105792773

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]