PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G260200.1
Common NameB456_004G260200, LOC105792694
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 512aa    MW: 58714.9 Da    PI: 10.2372
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G260200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.61.2e-14221031399
                         TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         ++ l lpk+f++ +g +   s t++++ ++g +W+v+l   k++g+++l++GWk+F++   Lk g  ++F+++g+s+f +v+++f++
  Gorai.004G260200.1  22 TQKLPLPKRFVSLYGDD--LSNTVIVKAPTGPEWKVEL--MKCDGEIWLANGWKDFADYFSLKYGNLLIFRYEGHSRF-YVFMIFDQ 103
                         46689******999988..889****************..*********************************99999.99999986 PP
2B352.49.6e-17211307199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ff v +++++ +     +p +fa+++     ++ +++l+d++gr+W + l++ +k   + +++GWk F+ +n+L++gD++ F+l +  e +
  Gorai.004G260200.1 211 FFVVNIQPSYITAFHANVPFTFARTYFTW--KEADVILKDRDGRTWPIHLKVYNKYHCTSFGRGWKAFAIDNDLRVGDSCAFELLEGPEIS 299
                         677788888888888999********744..4558***************87555556789**********************99888888 PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                         ++v++fr+
  Gorai.004G260200.1 300 FRVTIFRN 307
                         9***9997 PP
3B358.11.6e-18413505298
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         fkv ++ + l++g  ++p +f++eh+++   + ++tl+  + +sW+v++i++  + +  ++ GW+ Fv+ n+Lk+gD++vFk++++++  +
  Gorai.004G260200.1 413 FKVIITTNFLQRGFPSIPERFCDEHMEQ--IPEDVTLKY-KHKSWRVRMIICSDRAG-RFSVGWRAFVQGNKLKVGDVCVFKMIKKTNIVF 499
                         799999999****99**********866..555688776.779******77444333.4789********************998877777 PP

                         EEEEE- CS
                  B3  93 vvkvfr 98 
                          v++fr
  Gorai.004G260200.1 500 EVSIFR 505
                         888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.8E-18899IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-19999IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.08410103IPR003340B3 DNA binding domain
CDDcd100175.95E-1313102No hitNo description
SMARTSM010191.5E-1114104IPR003340B3 DNA binding domain
PfamPF023629.2E-1221103IPR003340B3 DNA binding domain
SuperFamilySSF1019361.86E-22205307IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.3E-23205306IPR015300DNA-binding pseudobarrel domain
CDDcd100174.91E-19210306No hitNo description
PROSITE profilePS5086313.987211308IPR003340B3 DNA binding domain
PfamPF023622.0E-14211307IPR003340B3 DNA binding domain
SMARTSM010192.3E-15211308IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-22405505IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-19408505IPR015300DNA-binding pseudobarrel domain
CDDcd100172.98E-18412505No hitNo description
SMARTSM010191.5E-16412507IPR003340B3 DNA binding domain
PROSITE profilePS5086313.803412507IPR003340B3 DNA binding domain
PfamPF023629.3E-16413505IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MFISSMNHPK TLHFFRIILS QTQKLPLPKR FVSLYGDDLS NTVIVKAPTG PEWKVELMKC  60
DGEIWLANGW KDFADYFSLK YGNLLIFRYE GHSRFYVFMI FDQTTFEIEY PNGIDNHDVE  120
LQIPDVEEVG SEDVVEIVNN VSPSRKTTEK TRSSPRKRTR MQGATNAKKS EFRMSSRDGS  180
KIGPEQAGGG TSAAQRSSAS SANHFGSEKP FFVVNIQPSY ITAFHANVPF TFARTYFTWK  240
EADVILKDRD GRTWPIHLKV YNKYHCTSFG RGWKAFAIDN DLRVGDSCAF ELLEGPEISF  300
RVTIFRNPED SNDRHTSTRG SKIGHGRHKR ELNARSQIEY DHSSEDEMIR YSKRNKGSQV  360
PRRKIKTRDG KFDEAMQNKT SARRAIQRLP SKGTAIARAL ERVSKLRSAH PLFKVIITTN  420
FLQRGFPSIP ERFCDEHMEQ IPEDVTLKYK HKSWRVRMII CSDRAGRFSV GWRAFVQGNK  480
LKVGDVCVFK MIKKTNIVFE VSIFRDGLTL G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476850.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A0D2RAX20.0A0A0D2RAX2_GOSRA; Uncharacterized protein
STRINGGorai.004G260200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2438934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-27B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]