PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G257000.2 | ||||||||
Common Name | B456_004G257000, LOC105792678 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HSF | ||||||||
Protein Properties | Length: 504aa MW: 55526.7 Da PI: 5.62 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.4 | 3.2e-35 | 25 | 116 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl+k+y++++d+++++++sws+ +nsfvv++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ Gorai.004G257000.2 25 FLSKTYDVVNDPSTDSVVSWSSGNNSFVVWKVPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKH 106 9****************************************************************999.........************** PP XXXXXXXXXX CS HSF_DNA-bind 93 llekikrkks 102 ll++i r+k Gorai.004G257000.2 107 LLKTISRRKP 116 *******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.1E-38 | 15 | 109 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.67E-34 | 20 | 114 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.1E-59 | 21 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 9.1E-31 | 25 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.5E-19 | 25 | 48 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.5E-19 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 64 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.5E-19 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 504 aa Download sequence Send to blast |
MDSLHDSISA ANAAAAANGN TVPPFLSKTY DVVNDPSTDS VVSWSSGNNS FVVWKVPEFA 60 RDLLPKYFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF LRGQKHLLKT ISRRKPPNVQ 120 SNQQPQVQNS SVGACIEVGK FGIEEEVERL KRDKNVLMQE LVRLRQQQQT TDNQLQTVGQ 180 RVQVMEQRQQ QMMSFLAKAM QSPSFLGQLV QQQNESNRRI TGANKKRRLP RQDEENLAGE 240 NGAVSAKGQI VKFQPSLNEA AKAMLHQIMK MNTSPSLDPS INNSGSFLID GVPPSNAPDS 300 RSSSSRISGV TLSEVQPASA QSYLQAESGF PDTCLSAAAH LTSEHTNVDQ ISRINEHKSQ 360 KHGVIPNVSQ MQGTMPDSTV GLTDRSLAGS ERGNAEYLDP LLDVLDGTMP VETDNFSADH 420 DMDILLNGSP ELPAINDVFW EKFLATSPLT GDTDEISSSS LENGANLEQQ QAPVRQENGW 480 DGIHHMNHLT EQMGLLSSNG QIR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-27 | 15 | 114 | 19 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-27 | 15 | 114 | 19 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-27 | 15 | 114 | 19 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00514 | DAP | Transfer from AT5G16820 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ702452 | 0.0 | KJ702452.1 Gossypium hirsutum heat shock transcription factor (HSF10) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001313939.1 | 0.0 | heat stress transcription factor A-1e-like | ||||
Refseq | XP_012476821.1 | 0.0 | PREDICTED: heat stress transcription factor A-1e-like isoform X2 | ||||
Swissprot | O81821 | 1e-164 | HFA1B_ARATH; Heat stress transcription factor A-1b | ||||
TrEMBL | A0A076L4V8 | 0.0 | A0A076L4V8_GOSHI; Heat shock transcription factor | ||||
TrEMBL | A0A0D2R478 | 0.0 | A0A0D2R478_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G257000.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02990.1 | 1e-140 | heat shock transcription factor A1E |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G257000.2 |
Entrez Gene | 105792678 |
Publications ? help Back to Top | |||
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