PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G247000.1

Common Name

B456_004G247000, LOC105792593

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 334aa MW: 37797 Da PI: 10.1389

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G247000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.9	1.5e-31	266	323	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYeg+Hnh+ Gorai.004G247000.1 266 DQYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCLEDPSMLIVTYEGDHNHS 323 9***********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.2E-17	217	262	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	6.7E-34	252	323	IPR003657	WRKY domain
PROSITE profile	PS50811	29.964	259	325	IPR003657	WRKY domain
SuperFamily	SSF118290	6.93E-27	262	323	IPR003657	WRKY domain
SMART	SM00774	2.1E-37	264	324	IPR003657	WRKY domain
Pfam	PF03106	6.7E-27	266	322	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MDMEGVEEAN KAAIESCNKV LSHLSLSKDQ IQFSNLMIET DEAVFKFKKV VSLLSSNGRK 60 RRKFKKITSN LPENIFLETP NCTTTLSPKL LQVYPHPNLL DKRTSIEVDF RAQHQLQLTQ 120 NLFDQKNQNP SFQMMNSSLV HHQHRVQFQQ MKNQAADMVF SKSNSGMNLK FDGSSSPTMS 180 FLSSLSMDHG SVNSLDGNSF HLIDIPRNFG QLSHQSRRCT FRGEDGNFKC GTSSTKCHCS 240 KRRKLRIKRT VKVPAISNKV ADIPPDQYSW RKYGQKPIKG SPHPRGYYKC SSVRGCPARK 300 HVERCLEDPS MLIVTYEGDH NHSGFLSTQS AHT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-20	262	322	15	74	Probable WRKY transcription factor 4
2ayd_A	7e-20	262	322	12	71	WRKY transcription factor 1
2lex_A	6e-20	262	322	15	74	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669794	0.0	KF669794.1 Gossypium hirsutum WRKY transcription factor 23 (WRKY23) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012476691.1	0.0	PREDICTED: probable WRKY transcription factor 74
Swissprot	Q93WU6	1e-103	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	A0A0D2PI19	0.0	A0A0D2PI19_GOSRA; Uncharacterized protein
STRING	Gorai.004G247000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3885	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28650.1	1e-98	WRKY DNA-binding protein 74

Link Out ? help Back to Top
Phytozome	Gorai.004G247000.1
Entrez Gene	105792593

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]