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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.004G231100.1 |
Common Name | B456_004G231100, LOC105792410 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
MYB |
Protein Properties |
Length: 316aa MW: 35809.9 Da PI: 7.9069 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.004G231100.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 52.8 | 9e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
+g+W++eEd +l+d+++++G+g +W + +++ g++R++k+c++rw++yl
Gorai.004G231100.1 14 KGPWSPEEDSKLKDYIEKYGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62
79*********************************************97 PP
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2 | Myb_DNA-binding | 39.2 | 1.6e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g +++eEd + ++++ G++ W+ Ia+ ++ gRt++++k++w++
Gorai.004G231100.1 69 GEFSEEEDMVICNLFATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
78*******************.*********.***********97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 316 aa
Download sequence Send
to blast |
MGRAPCCDKA SVKKGPWSPE EDSKLKDYIE KYGTGGNWIA LPHKAGLKRC GKSCRLRWLN 60 YLRPNIKHGE FSEEEDMVIC NLFATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMAL 120 SSQSQRKPPP LPIPSSHQTI PPSYKDCSSY YCTPSTRSFA GFEPLSTVQS DLLNHNNTFL 180 ATDSSLNHTT PDSFVSYYPV KEKFLMFGSE PSCSSSDGSS HGKEIKQEDV SNFQGFCAPN 240 GYEDNHKFML SYGNRNQWAE KPSGYHGETP LDYDLEDVKR LIDSSSSNNS CNNNNNNHFF 300 IDESKRQEKV MYYYY*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KM052723 | 0.0 | KM052723.1 Gossypium hirsutum RAX-like transcription factor RAX4 mRNA, complete cds. |