PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G227000.2
Common NameB456_004G227000, LOC105792366
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 441aa    MW: 50432.7 Da    PI: 4.3064
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G227000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM116.13.5e-3641342128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          +GfrFhPtdeel+ eyL+ k+ +++  + +vi+e+ di+++ePw+Lp +  ++++++ wyf  + + ky+++k  +r+t +gyWk tgk 
  Gorai.004G227000.2   4 VKGFRFHPTDEELI-EYLQIKTFNRDSLV-QVIAEIpDICEFEPWELPgRsVLQTGDRLWYFMYPPKYKYRNSKLVSRTTLEGYWKITGKA 92 
                         68************.9******9999666.89****************6347788999********************************* PP

                 NAM  90 kevlsk.kgelvglkktLvfykg..rapkgektdWvmheyrl 128
                         ++++++ +g ++g kktL fykg  +++  ++t Wvmhey+l
  Gorai.004G227000.2  93 RKIVNSeTGMEIGNKKTLLFYKGqcNDKIRNNTCWVMHEYEL 134
                         ***99867888**********9833444456899******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-352135IPR003441NAC domain
PROSITE profilePS5100538.3213174IPR003441NAC domain
PfamPF023651.7E-195134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MNMVKGFRFH PTDEELIEYL QIKTFNRDSL VQVIAEIPDI CEFEPWELPG RSVLQTGDRL  60
WYFMYPPKYK YRNSKLVSRT TLEGYWKITG KARKIVNSET GMEIGNKKTL LFYKGQCNDK  120
IRNNTCWVMH EYELKAMLDS TNSHQDILDP NGSSEPEASN NHNDVHNLCR TVDTYGDERS  180
NQHNIVDEDE GPNISTNFVN HVAEDAIPEV PSHIFKVYQN GLEDNNWVQD LYSTIEQDDE  240
SCNLIITSFD ETITNESSNQ HNIVVAEKGI ETPIISYDET VTNERSNQHN IVVIEEGTEM  300
SVISYDETVA NERSNQHNIV DVDEGFEMPS NLKYLVEEDT ISTELLYNDG LYSRSLFGEL  360
LAEPEATNNS NWIQNQYITK KEDGEFLNST LADKNKAYLQ EGNTQWCLAA DGEGFSLPCI  420
GALMESSNSM EKSSKRPRRM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-26113413140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476365.10.0PREDICTED: NAC domain-containing protein 67-like isoform X3
TrEMBLA0A0D2N2D90.0A0A0D2N2D9_GOSRA; Uncharacterized protein
STRINGGorai.004G227000.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.29e-36TCV-interacting protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]