PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G218900.1 | ||||||||
Common Name | B456_004G218900, LOC105792284 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 306aa MW: 32118.2 Da PI: 5.7091 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.4 | 1.5e-09 | 154 | 198 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a +L + v+Y+k L Gorai.004G218900.1 154 HSIAERLRRERIAERIRALQELVPSvN------KTDRAVMLDEIVDYVKFL 198 99***********************55......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.06E-15 | 147 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.044 | 149 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-14 | 151 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.5E-7 | 154 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-10 | 155 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MANNPNEASA DDFLEQILGF PNFAPSETGL AGPDGGLTGT TAGAGTPMFL QLSSGDGASH 60 LGGIGGGGGG AFPGQVFPLG LSLDQGKSGG FLKPEEGSGG SSRRFRDEVV DGRASSVKNV 120 FHGSPMPATV APSPHPPTMR PRVRARRGQA TDPHSIAERL RRERIAERIR ALQELVPSVN 180 KTDRAVMLDE IVDYVKFLRL QVKVLSMSRL GGAGAVAPLV TDIPLSSVED ESGDGGRNQP 240 AWEKWSNDGT ERQVAKLMEE NVGAAMQFLQ SKALCIMPIS LATAIYHSQP LDTSSIVKPE 300 TDPPP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 158 | 163 | RLRRER |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012476242.1 | 0.0 | PREDICTED: transcription factor UNE12-like | ||||
Refseq | XP_012476243.1 | 0.0 | PREDICTED: transcription factor UNE12-like | ||||
Swissprot | O22768 | 1e-133 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A0D2PGB4 | 0.0 | A0A0D2PGB4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G218900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1611 | 28 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.2 | 1e-123 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G218900.1 |
Entrez Gene | 105792284 |
Publications ? help Back to Top | |||
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