PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 306aa MW: 32118.2 Da PI: 5.7091

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G218900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.4	1.5e-09	154	198	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a +L + v+Y+k L Gorai.004G218900.1 154 HSIAERLRRERIAERIRALQELVPSvN------KTDRAVMLDEIVDYVKFL 198 99*********************55......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.06E-15	147	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.044	149	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-14	151	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.5E-7	154	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-10	155	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0031347	Biological Process	regulation of defense response
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MANNPNEASA DDFLEQILGF PNFAPSETGL AGPDGGLTGT TAGAGTPMFL QLSSGDGASH 60 LGGIGGGGGG AFPGQVFPLG LSLDQGKSGG FLKPEEGSGG SSRRFRDEVV DGRASSVKNV 120 FHGSPMPATV APSPHPPTMR PRVRARRGQA TDPHSIAERL RRERIAERIR ALQELVPSVN 180 KTDRAVMLDE IVDYVKFLRL QVKVLSMSRL GGAGAVAPLV TDIPLSSVED ESGDGGRNQP 240 AWEKWSNDGT ERQVAKLMEE NVGAAMQFLQ SKALCIMPIS LATAIYHSQP LDTSSIVKPE 300 TDPPP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	158	163	RLRRER

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012476242.1	0.0	PREDICTED: transcription factor UNE12-like
Refseq	XP_012476243.1	0.0	PREDICTED: transcription factor UNE12-like
Swissprot	O22768	1e-133	UNE12_ARATH; Transcription factor UNE12
TrEMBL	A0A0D2PGB4	0.0	A0A0D2PGB4_GOSRA; Uncharacterized protein
STRING	Gorai.004G218900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1611	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.2	1e-123	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.004G218900.1
Entrez Gene	105792284

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]