PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G215900.4
Common NameB456_004G215900
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 579aa    MW: 64773.4 Da    PI: 4.9096
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G215900.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.3e-14379425455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Gorai.004G215900.4 379 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 425
                         7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.7E-231384IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.22E-19375443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.625375424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-19379441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.2E-12379424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-14379429No hitNo description
SMARTSM003531.4E-17381430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MVLRSYICTW VCRLPGKAYA RRQHVWLTGA NEVDSKTFSR AILAKSACIQ TVLCIPILDG  60
VLELGYTEKV QEDLGLVQHV KTFFNDGKAP NPPPPKPALS EHSTSNPAAS SDYTRFHSPS  120
IPLVYAAADP PVNADQGEYN NVDEEEEEEE EDDDDEEGDE EPESYSAETG RTTQQVPTEN  180
TLAVVAAEEP SELMQLDMSE DIKLGSPDDA SNNLDSDFNM LAVSQSGNPT DNQRRAELFR  240
DESNRRWQML QEPSCGSLQP LSTGPQPVDE MSQEDTHYSQ TVSTILQAQL ARWTESPSTV  300
NAATYSTQSA FAKWTTHSDH HLHSAVVEGT SQWLLKYILF TVPFLHNKYR DENSPKLRDA  360
AVAAARFRKG TPNEDLSANH VLAERRRREK LNERFIILRS LVPFVTKMDK ASILGDTIEY  420
VKQLRKKIQD LETRNKQMEA DNDRPRSADS MQRNSSSKDQ RSGLTTRSSG PDKKKMRIAE  480
ATKQKTAEPA PQTAETSVEV SIIESDALLE LQCGYREGLL LDIMQMLREK LRIEITAVQS  540
SLNNGLFTAE LRAKVKDNMN GKKVSIMEVK RAINQIIP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-15379438867Transcription factor MYC2
5gnj_B9e-15379438867Transcription factor MYC2
5gnj_E9e-15379438867Transcription factor MYC2
5gnj_F9e-15379438867Transcription factor MYC2
5gnj_G9e-15379438867Transcription factor MYC2
5gnj_I9e-15379438867Transcription factor MYC2
5gnj_M9e-15379438867Transcription factor MYC2
5gnj_N9e-15379438867Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1383388ERRRRE
2384389RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6988700.0KP698870.1 Gossypium raimondii basic helix-loop-helix protein 064D (bHLH064D) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476197.10.0PREDICTED: basic helix-loop-helix protein A-like isoform X1
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A0D2N1T90.0A0A0D2N1T9_GOSRA; Uncharacterized protein
STRINGGorai.004G215900.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-61bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]