PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G215900.2

Common Name

B456_004G215900, LOC105792257

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 681aa MW: 76139 Da PI: 4.8065

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G215900.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44	4.1e-14	481	527	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ Gorai.004G215900.2 481 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 527 7999********************8.....8***************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.7E-52	9	186	IPR025610	Transcription factor MYC/MYB N-terminal
SuperFamily	SSF47459	2.88E-19	477	545	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.625	477	526	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.32E-15	481	531	No hit	No description
Pfam	PF00010	1.1E-11	481	526	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-19	481	543	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-17	483	532	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence Send to blast
MAAPPSSRLQ KMLQAAVQSV QWTYSLFWQI CPQQGILIWS DGYYNGAIKT RKTVQPMEVS 60 TEEASLQRSQ QLRELYDSLS SGDTNQPARR PSAALSPEDL TESEWFYLMC VSFSFPPGVG 120 LPGKAYARRQ HVWLTGANEV DSKTFSRAIL AKTVLCIPIL DGVLELGYTE KVQEDLGLVQ 180 HVKTFFNDGK APNPPPPKPA LSEHSTSNPA ASSDYTRFHS PSIPLVYAAA DPPVNADQGE 240 YNNVDEEEEE EEEDDDDEEG DEEPESYSAE TGRTTQQVPT ENTLAVVAAE EPSELMQLDM 300 SEDIKLGSPD DASNNLDSDF NMLAVSQSGN PTDNQRRAEL FRDESNRRWQ MLQEPSCGSL 360 QPLSTGPQPV DEMSQEDTHY SQTVSTILQA QLARWTESPS TVNAATYSTQ SAFAKWTTHS 420 DHHLHSAVVE GTSQWLLKYI LFTVPFLHNK YRDENSPKLR DAAVAAARFR KGTPNEDLSA 480 NHVLAERRRR EKLNERFIIL RSLVPFVTKM DKASILGDTI EYVKQLRKKI QDLETRNKQM 540 EADNDRPRSA DSMQRNSSSK DQRSGLTTRS SGPDKKKMRI AEATKQKTAE PAPQTAETSV 600 EVSIIESDAL LELQCGYREG LLLDIMQMLR EKLRIEITAV QSSLNNGLFT AELRAKVKDN 660 MNGKKVSIME VKRAINQIIP *

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence Send to blast

MAAPPSSRLQ KMLQAAVQSV QWTYSLFWQI CPQQGILIWS DGYYNGAIKT RKTVQPMEVS  60
TEEASLQRSQ QLRELYDSLS SGDTNQPARR PSAALSPEDL TESEWFYLMC VSFSFPPGVG  120
LPGKAYARRQ HVWLTGANEV DSKTFSRAIL AKTVLCIPIL DGVLELGYTE KVQEDLGLVQ  180
HVKTFFNDGK APNPPPPKPA LSEHSTSNPA ASSDYTRFHS PSIPLVYAAA DPPVNADQGE  240
YNNVDEEEEE EEEDDDDEEG DEEPESYSAE TGRTTQQVPT ENTLAVVAAE EPSELMQLDM  300
SEDIKLGSPD DASNNLDSDF NMLAVSQSGN PTDNQRRAEL FRDESNRRWQ MLQEPSCGSL  360
QPLSTGPQPV DEMSQEDTHY SQTVSTILQA QLARWTESPS TVNAATYSTQ SAFAKWTTHS  420
DHHLHSAVVE GTSQWLLKYI LFTVPFLHNK YRDENSPKLR DAAVAAARFR KGTPNEDLSA  480
NHVLAERRRR EKLNERFIIL RSLVPFVTKM DKASILGDTI EYVKQLRKKI QDLETRNKQM  540
EADNDRPRSA DSMQRNSSSK DQRSGLTTRS SGPDKKKMRI AEATKQKTAE PAPQTAETSV  600
EVSIIESDAL LELQCGYREG LLLDIMQMLR EKLRIEITAV QSSLNNGLFT AELRAKVKDN  660
MNGKKVSIME VKRAINQIIP *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	3e-21	9	187	9	193	Transcription factor MYC3
4rqw_B	3e-21	9	187	9	193	Transcription factor MYC3
4rs9_A	3e-21	9	187	9	193	Transcription factor MYC3
4yz6_A	3e-21	9	187	9	193	Transcription factor MYC3
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	485	490	ERRRRE
2	486	491	RRRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the control of flavonoid pigmentation. {ECO:0000269\|PubMed:20949001}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP698870	0.0	KP698870.1 Gossypium raimondii basic helix-loop-helix protein 064D (bHLH064D) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012476198.1	0.0	PREDICTED: basic helix-loop-helix protein A-like isoform X2
Swissprot	E3SXU4	0.0	BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBL	A0A0D2R8K8	0.0	A0A0D2R8K8_GOSRA; Uncharacterized protein
STRING	Gorai.004G215900.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	3e-90	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.004G215900.2
Entrez Gene	105792257

Publications ? help Back to Top
Hellens RP, et al. Identification of Mendel's white flower character. PLoS ONE, 2010. 5(10): p. e13230 [PMID:20949001] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Yan Q, et al. The Basic/Helix-Loop-Helix Protein Family in Gossypium: Reference Genes and Their Evolution during Tetraploidization. PLoS ONE, 2015. 10(5): p. e0126558 [PMID:25992947]