PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.004G215900.1 | ||||||||
Common Name | B456_004G215900, bHLH064D, LOC105792257 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 686aa MW: 76641.6 Da PI: 4.8065 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.9 | 4.1e-14 | 486 | 532 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ Gorai.004G215900.1 486 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 532 7999**********************8.....8*****************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.3E-56 | 9 | 191 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.625 | 482 | 531 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-19 | 482 | 550 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-19 | 486 | 548 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-11 | 486 | 531 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.75E-15 | 486 | 536 | No hit | No description |
SMART | SM00353 | 1.4E-17 | 488 | 537 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 686 aa Download sequence Send to blast |
MAAPPSSRLQ KMLQAAVQSV QWTYSLFWQI CPQQGILIWS DGYYNGAIKT RKTVQPMEVS 60 TEEASLQRSQ QLRELYDSLS SGDTNQPARR PSAALSPEDL TESEWFYLMC VSFSFPPGVG 120 LPGKAYARRQ HVWLTGANEV DSKTFSRAIL AKSACIQTVL CIPILDGVLE LGYTEKVQED 180 LGLVQHVKTF FNDGKAPNPP PPKPALSEHS TSNPAASSDY TRFHSPSIPL VYAAADPPVN 240 ADQGEYNNVD EEEEEEEEDD DDEEGDEEPE SYSAETGRTT QQVPTENTLA VVAAEEPSEL 300 MQLDMSEDIK LGSPDDASNN LDSDFNMLAV SQSGNPTDNQ RRAELFRDES NRRWQMLQEP 360 SCGSLQPLST GPQPVDEMSQ EDTHYSQTVS TILQAQLARW TESPSTVNAA TYSTQSAFAK 420 WTTHSDHHLH SAVVEGTSQW LLKYILFTVP FLHNKYRDEN SPKLRDAAVA AARFRKGTPN 480 EDLSANHVLA ERRRREKLNE RFIILRSLVP FVTKMDKASI LGDTIEYVKQ LRKKIQDLET 540 RNKQMEADND RPRSADSMQR NSSSKDQRSG LTTRSSGPDK KKMRIAEATK QKTAEPAPQT 600 AETSVEVSII ESDALLELQC GYREGLLLDI MQMLREKLRI EITAVQSSLN NGLFTAELRA 660 KVKDNMNGKK VSIMEVKRAI NQIIP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 2e-22 | 9 | 192 | 9 | 193 | Transcription factor MYC3 |
4rqw_B | 2e-22 | 9 | 192 | 9 | 193 | Transcription factor MYC3 |
4rs9_A | 2e-22 | 9 | 192 | 9 | 193 | Transcription factor MYC3 |
4yz6_A | 2e-22 | 9 | 192 | 9 | 193 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 490 | 495 | ERRRRE |
2 | 491 | 496 | RRRREK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KP698870 | 0.0 | KP698870.1 Gossypium raimondii basic helix-loop-helix protein 064D (bHLH064D) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012476197.1 | 0.0 | PREDICTED: basic helix-loop-helix protein A-like isoform X1 | ||||
Swissprot | E3SXU4 | 0.0 | BHLHW_PEA; Basic helix-loop-helix protein A | ||||
TrEMBL | A0A0D2R1W1 | 0.0 | A0A0D2R1W1_GOSRA; Basic helix-loop-helix protein 064D | ||||
STRING | Gorai.004G215900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9422 | 28 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G09820.1 | 1e-94 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.004G215900.1 |
Entrez Gene | 105792257 |
Publications ? help Back to Top | |||
---|---|---|---|
|