PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TALE

Protein Properties

Length: 301aa MW: 33765.1 Da PI: 6.7069

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G206600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	23.6	8.9e-08	249	282	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + Gorai.004G206600.1 249 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 282 469*****************************87 PP
2	ELK	25.5	3.1e-09	203	224	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ Gorai.004G206600.1 203 ELKIELKQGFKSRIEDVREEIL 224 9*******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	5.2E-19	34	78	IPR005540	KNOX1
Pfam	PF03790	5.3E-17	36	77	IPR005540	KNOX1
SMART	SM01256	7.8E-24	92	147	IPR005541	KNOX2
Pfam	PF03791	1.6E-17	95	146	IPR005541	KNOX2
PROSITE profile	PS51213	9.132	203	223	IPR005539	ELK domain
PROSITE profile	PS50071	11.677	223	286	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.02E-16	225	290	IPR009057	Homeodomain-like
SMART	SM00389	1.4E-10	225	290	IPR001356	Homeobox domain
CDD	cd00086	5.38E-11	226	287	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.0E-25	230	288	IPR009057	Homeodomain-like
Pfam	PF05920	1.0E-17	243	282	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MQEPGLGMMS SGGGSGGIGG LSSGEVSVSG EQNRQLKAEI AVHPLYEQLL AAHVSCLRVA 60 TPIDQLPLID AQLAQSHNLL RSYASQHHQH GHSLSPHERQ ELDNFLAQYL IVLCTFKEQL 120 QQHVRVHAIE AVMACREIEN NLQALTGVTL GEGTGATMSD DEDDMQMDFS LDQSGTDGHD 180 LMGFGPLVPT ESERSLMERV RQELKIELKQ GFKSRIEDVR EEILRKRRAG KLPGDTTTVL 240 KNWWQQHSKW PYPTEDDKAK LVEETGLQLK QINNWFINQR KRNWHSNSQS VTSLKSKRKR 300 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1x2n_A	1e-12	226	282	8	64	Homeobox protein PKNOX1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	279	299	RKRNWHSNSQSVTSLKSKRKR

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in secondary cell wall biosynthesis. {ECO:0000269\|PubMed:15980264}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC200250	0.0	KC200250.1 Gossypium hirsutum KNOX protein (KNL1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012476037.1	0.0	PREDICTED: homeobox protein HD1-like
Swissprot	Q9FPQ8	1e-173	KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBL	A0A0D2S334	0.0	A0A0D2S334_GOSRA; Uncharacterized protein
STRING	Gorai.004G206600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM444	28	158

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62990.1	1e-170	KNOTTED-like homeobox of Arabidopsis thaliana 7

Link Out ? help Back to Top
Phytozome	Gorai.004G206600.1
Entrez Gene	105792160

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He JB, et al. KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis. J Integr Plant Biol, 2018. 60(6): p. 514-528 [PMID:29393579]