PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G204600.1 | ||||||||
Common Name | B456_004G204600, LOC105792140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GRF | ||||||||
Protein Properties | Length: 256aa MW: 27571 Da PI: 8.4839 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 81.2 | 9e-26 | 144 | 188 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rs+k +e+ Gorai.004G204600.1 144 DPEPGRCRRTDGKKWRCSKEAVPDHKYCERHMHRGRQRSTKLVEA 188 79****************************************997 PP | |||||||
2 | QLQ | 46.7 | 9.5e-17 | 75 | 109 | 3 | 37 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT Qlq+L Q l+yKy+ a++PvP++Ll++i+k Gorai.004G204600.1 75 FTVFQLQELQLQSLIYKYMEAGLPVPHHLLLPIWK 109 8888*****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 7.1E-6 | 73 | 109 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.355 | 74 | 109 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.4E-11 | 75 | 108 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.509 | 144 | 188 | IPR014977 | WRC domain |
Pfam | PF08879 | 7.8E-22 | 145 | 187 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MNCAHTQEME PQDSSPLKTA NFSDLGIGLT NLGDSWNKES NRLSGGEGSP PIGLGLELGC 60 GSGHIPTGIT KSCGFTVFQL QELQLQSLIY KYMEAGLPVP HHLLLPIWKS VAGSLGGLHG 120 SPYQLYYGFL GCGPLQLGYK NGVDPEPGRC RRTDGKKWRC SKEAVPDHKY CERHMHRGRQ 180 RSTKLVEASQ ATRTSISRNN ANTNLSISLQ VDSSNNSGNG SNLSSSFTGF SPNIALLRGG 240 DSKAVPHSLQ FQELL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012476011.1 | 0.0 | PREDICTED: growth-regulating factor 10-like | ||||
TrEMBL | A0A0D2PFF5 | 0.0 | A0A0D2PFF5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G204600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16724 | 7 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 9e-35 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G204600.1 |
Entrez Gene | 105792140 |
Publications ? help Back to Top | |||
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