PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 293aa MW: 32850.9 Da PI: 10.121

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G199500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.5	8.5e-31	223	279	3	58
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 D ++WrKYGqK++kgs++prsYY+C+s+ gCp++k+ver+ edp+++++tYeg+H+h Gorai.004G199500.1 223 DDHSWRKYGQKPIKGSPYPRSYYKCSSTrGCPARKHVERCLEDPSMLVVTYEGDHKH 279 99**********************999*************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.4E-16	180	219	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	2.8E-32	209	280	IPR003657	WRKY domain
PROSITE profile	PS50811	28.943	216	279	IPR003657	WRKY domain
SuperFamily	SSF118290	3.79E-26	218	279	IPR003657	WRKY domain
SMART	SM00774	3.1E-36	221	281	IPR003657	WRKY domain
Pfam	PF03106	1.8E-26	223	279	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MNPRWDLKVH EVAESSFRRA NHLFSCICDG SQKRSNQEIS LMAQDTVNGF RKLLSLLDGS 60 MQSECKRIRR GPLPKSNNVN PAELMDSPSF ASQSSICKPS QPHILGQLVS PQFNQSNTRL 120 IPRNVVVLPN LIMGLHHSST LPTMMPIFDK KLIPWSSSEI VVPQDESCML LSKRKIGVES 180 EEASTKCAAS TGGCHCSKRR KLRIRKTIRV PAISNKPSDI PPDDHSWRKY GQKPIKGSPY 240 PRSYYKCSST RGCPARKHVE RCLEDPSMLV VTYEGDHKHL RITFQSPSNV MV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-20	219	279	12	71	WRKY transcription factor 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669796	0.0	KF669796.1 Gossypium hirsutum WRKY transcription factor 28 (WRKY28) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012475934.1	0.0	PREDICTED: probable WRKY transcription factor 17 isoform X1
Refseq	XP_012475935.1	0.0	PREDICTED: probable WRKY transcription factor 17 isoform X1
Refseq	XP_012475936.1	0.0	PREDICTED: probable WRKY transcription factor 17 isoform X1
TrEMBL	A0A0D2S2Y1	0.0	A0A0D2S2Y1_GOSRA; Uncharacterized protein
STRING	Gorai.004G199500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20136	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30590.1	1e-45	WRKY DNA-binding protein 21

Link Out ? help Back to Top
Phytozome	Gorai.004G199500.1
Entrez Gene	105792083

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]