PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G198300.1
Common NameB456_004G198300, LOC105792068
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 303aa    MW: 33402.3 Da    PI: 9.1045
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G198300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027207229123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C+k F +  +L+ H r++
  Gorai.004G198300.1 207 HRCGKCKKAFGSYNTLEEHKRVC 229
                         79******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.2E-5427IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.907431IPR007087Zinc finger, C2H2
SMARTSM003550.12426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PROSITE profilePS501578.85207228IPR007087Zinc finger, C2H2
PfamPF139120.0045207227IPR007087Zinc finger, C2H2
SMARTSM0035522207227IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.72E-6207261No hitNo description
PfamPF139124.3E-11238261IPR007087Zinc finger, C2H2
PROSITE profilePS501579.411239261IPR007087Zinc finger, C2H2
SMARTSM003550.35239261IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280241261IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEKHKCKLCA RTFSNGRALG GHMKGHLANH PLPPKTTHHQ LSNRTDSASS SSSSSGDDEQ  60
EKSRETLLED KSLVYGLREN PKKSFRFADP EFSFAGDSGS VVQDRESETE SRNPTRRRSK  120
RKPKVGTANA TTATDEIKKP KLLTSFPSLI DSPAEPEPLS SVSDTSPEED VAVCLMLLSR  180
DVWKRNNVEQ RSEKPMESSK KKMNGKHRCG KCKKAFGSYN TLEEHKRVCL SSAADSKRFE  240
CPFCYRVFGS GQALGGHKRS HLLASASSSN TAAKFTKFDN NFIDLNLPAP LEDDEFSVVS  300
DA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115121RRRSKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475906.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A0D2N1190.0A0A0D2N119_GOSRA; Uncharacterized protein
STRINGGorai.004G198300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17350611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.19e-39C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]