PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G183700.1
Common NameB456_004G183700, LOC105791916
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 341aa    MW: 37764.3 Da    PI: 5.4346
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G183700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.91.3e-191562148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd++lvd+++++G g+W++ ++  g++R++k+c++rw +yl
  Gorai.004G183700.1 15 KGPWTPEEDQKLVDCINKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62
                        79********************************************97 PP
2Myb_DNA-binding54.33.1e-1768111146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg++T+eE+  ++++++ lG++ W++Ia++++ gRt++++k++w++
  Gorai.004G183700.1  68 RGKFTEEEERVIINLHAVLGNK-WSRIAAHLP-GRTDNEIKNYWNT 111
                         89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.5261062IPR017930Myb domain
SuperFamilySSF466898.81E-3312109IPR009057Homeodomain-like
SMARTSM007174.1E-161464IPR001005SANT/Myb domain
PfamPF002494.4E-181562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-251669IPR009057Homeodomain-like
CDDcd001672.49E-121762No hitNo description
PROSITE profilePS5129428.16163117IPR017930Myb domain
SMARTSM007171.1E-1567115IPR001005SANT/Myb domain
PfamPF002491.1E-1568111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-2770117IPR009057Homeodomain-like
CDDcd001674.15E-1270111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGRSPCCAED ANLKKGPWTP EEDQKLVDCI NKHGHGSWRA LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FTEEEERVII NLHAVLGNKW SRIAAHLPGR TDNEIKNYWN TQIRKKLLNM  120
GIDPQTHKPR TDLNHLLNLS QLLCASQLGN LMNPWDTAFK LQVDAAQLAK TQLLQNLLKI  180
INTNKPATVD TAGFLGSQNP YPIEGLLGGT STLSDKELAP TPENITNNAG ATSQTSTDFQ  240
ALEDPCAYFG NGFNYESNLG MNNQSLSNSF EQTENPLPEL VSASLGQTSS INQTDNKTET  300
APDSTIYEAW DKLIMEDEAD GSYWKEILDL TSSSSSPISW *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-32121174108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475675.10.0PREDICTED: transcription factor MYB39-like
TrEMBLA0A0D2S2090.0A0A0D2S209_GOSRA; Uncharacterized protein
STRINGGorai.004G183700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.19e-87myb domain protein 107
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]