PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G183500.1
Common NameB456_004G183500
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 310aa    MW: 34607.8 Da    PI: 6.4205
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G183500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding66.35.6e-211663148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEde+l+d+++ +G g+Wkt +++ g++R++k+c++rw +yl
  Gorai.004G183500.1 16 KGPWTPEEDEKLLDYINTHGHGNWKTLPKHAGLNRCGKSCRLRWANYL 63
                        79********************************************97 PP
2Myb_DNA-binding56.85e-1869113147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rgr+++eE+ l+v+++  lG++ W++Ia +++ gRt++++k++w+++
  Gorai.004G183500.1  69 RGRFSEEEERLIVNLHSTLGNK-WSKIATYLP-GRTDNEIKNFWNTH 113
                         89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-26966IPR009057Homeodomain-like
PROSITE profilePS5129419.3031163IPR017930Myb domain
SuperFamilySSF466891.58E-3213110IPR009057Homeodomain-like
SMARTSM007178.6E-171565IPR001005SANT/Myb domain
PfamPF002491.3E-181663IPR001005SANT/Myb domain
CDDcd001672.08E-131863No hitNo description
PROSITE profilePS5129427.34564118IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-2667118IPR009057Homeodomain-like
SMARTSM007177.7E-1768116IPR001005SANT/Myb domain
PfamPF002492.8E-1669113IPR001005SANT/Myb domain
CDDcd001671.08E-1271114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGRSPCCSSD DANLKKGPWT PEEDEKLLDY INTHGHGNWK TLPKHAGLNR CGKSCRLRWA  60
NYLRPDIKRG RFSEEEERLI VNLHSTLGNK WSKIATYLPG RTDNEIKNFW NTHIRKKLLN  120
MGLDPNTHKP RTDLNHLLNL TQLICAAQLG SLMNPWESSA LKVQADAAQL LQNLIQTLNT  180
NQLSTITAGL MGSQKSYPYE GLINGTSSLY ADEPAPVPQK FHSMSQGYES ADMSDFLISE  240
LVSESPETAT TSMNQMGDDK TNTNHSSTMS PADTSMFQAW EKLMGDETDS SFWKDILDLT  300
SSPSSPIQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31131184108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016721290.10.0PREDICTED: transcription factor MYB39-like
TrEMBLA0A0D2PEA10.0A0A0D2PEA1_GOSRA; Uncharacterized protein
STRINGGorai.004G183500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-80myb domain protein 9
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]