PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G174900.1
Common NameB456_004G174900, LOC105791802
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 262aa    MW: 31258 Da    PI: 6.9667
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G174900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.42.1e-24687186
            trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                        +W ++e+++Li +r e+e+++ ++k +k+lWe vs++m++rg++r+p qCk+kw+nl +ryk  ++++ ++      ++p+f++l+
  Gorai.004G174900.1  6 QWGQEETRELIFIRGELERDFTAAKHNKTLWEIVSARMKDRGYTRTPDQCKSKWKNLLNRYKGKETSDPEN----GCQFPFFEELH 87
                        7**************************************************************99999985....44689***998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.258163IPR017877Myb-like domain
SMARTSM007172.1E-4365IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-5465IPR009057Homeodomain-like
SuperFamilySSF466894.81E-5688IPR009057Homeodomain-like
PfamPF138378.4E-22688No hitNo description
CDDcd122034.13E-22670No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MLGSGQWGQE ETRELIFIRG ELERDFTAAK HNKTLWEIVS ARMKDRGYTR TPDQCKSKWK  60
NLLNRYKGKE TSDPENGCQF PFFEELHAVF TERAKTMQRR LLEPEAGSGS TQAKKKVKRT  120
ITERSSDEFS EGEDEDESEE EKPARGISHK RKKSDSTVLD KSPRPNSGTS TGLQEMLREF  180
FDQQLRMEMQ WREMMEKRAQ ERQLFEQEWQ HWMEKLERER LMVEKAWRER EEEMRRREES  240
RAERRDSLLT TLLNKLINDN N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A5e-15785786DNA binding protein GT-1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6517840.0EF651784.1 Gossypium hirsutum transcription factor TF2 (TF2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475490.10.0PREDICTED: trihelix transcription factor GT-3b-like
TrEMBLA0A0D2S1D80.0A0A0D2S1D8_GOSRA; Uncharacterized protein
STRINGGorai.004G174900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17512910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.12e-39Trihelix family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]