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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Gorai.004G173300.1 |
| Common Name | B456_004G173300, LOC105791785 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
C3H |
| Protein Properties |
Length: 361aa MW: 40493.3 Da PI: 8.5184 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.004G173300.1 | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 18.4 | 3.7e-06 | 2 | 25 | 1 | 25 |
--S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25
+k++lC+ffa G C G+ C F+H
Gorai.004G173300.1 2 PKRVLCKFFAH-GACLKGEHCEFSH 25
79*****6666.************* PP
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| 2 | zf-CCCH | 17.5 | 7.6e-06 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
+C ++++ G C yG+rC++ H+
Gorai.004G173300.1 34 ICTYYQK-GNCFYGSRCRYEHV 54
7******.***********997 PP
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| 3 | zf-CCCH | 17.8 | 5.9e-06 | 142 | 164 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26
+++C+ fa G C++G++C+ +Hg
Gorai.004G173300.1 142 RSICS-FAVAGNCPRGEKCPHIHG 164
67899.**************9998 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 5.9E-5 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.136 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 7.98E-7 | 4 | 26 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.117 | 30 | 56 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0011 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 5.76E-5 | 32 | 53 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 4.2E-4 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.502 | 139 | 166 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.02 | 141 | 165 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF57850 | 2.27E-13 | 197 | 272 | No hit | No description |
| Gene3D | G3DSA:3.30.40.10 | 4.5E-10 | 201 | 267 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| CDD | cd00162 | 0.00365 | 207 | 267 | No hit | No description |
| Pfam | PF00097 | 8.0E-8 | 208 | 265 | IPR018957 | Zinc finger, C3HC4 RING-type |
| PROSITE profile | PS50089 | 12.238 | 208 | 266 | IPR001841 | Zinc finger, RING-type |
| SMART | SM00184 | 2.8E-7 | 208 | 265 | IPR001841 | Zinc finger, RING-type |
| PROSITE pattern | PS00518 | 0 | 232 | 241 | IPR017907 | Zinc finger, RING-type, conserved site |
| PROSITE profile | PS50103 | 14.164 | 295 | 324 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.25 | 295 | 323 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 361 aa
Download sequence Send
to blast |
MPKRVLCKFF AHGACLKGEH CEFSHQWKHP PNNICTYYQK GNCFYGSRCR YEHVKASQSD 60
PSASSSSTAP QQSTLSDTMP LAPSKTAFVG SVVSPAASSK VPGCSRACLA PFKQPCDLES 120
GPQDLSDNGE SIEPRRTNPV ERSICSFAVA GNCPRGEKCP HIHGDLCPTC EKHCLHPFRP 180
EEREEHIKMC KKKKKYLDAL KHSQEIECSV CLDRVLSKPT AAERKFGLLS ECDHPFCISC 240
IRNWRSSSPS SGMDVNTALR ACPICRKLSY FVIPSVIWYW TPEEKQRIVD GYKAKLRTIN 300
CKHFNFGNGN CPFGNSCFYK HAYRDGQLEE MALRHLRAED GRTIITKNIR LSNFLGDYAH 360
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