PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 177aa MW: 19153.4 Da PI: 7.6777

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G165700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	23.2	1.7e-07	91	126	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+ +lg++ t+e+Aa a+++a+ k++g Gorai.004G165700.1 91 YRGVRRRP-WGK-------N---------WLGTYQTPEDAALAYDKAAFKIRG 126 9**999.888.......5.........89******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	2.0E-21	90	140	IPR001471	AP2/ERF domain
CDD	cd00018	1.79E-21	90	136	No hit	No description
PROSITE profile	PS51032	14.776	90	134	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.6E-13	91	135	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	9.8E-15	102	135	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MLTDQSESNS VISEDLAFLD SISQHILADD SEASFTLLDD VVSFDWQPLY GGATSSLLRN 60 PLNVGPPQPV EVKASQLEEE AAVGSGKRVN YRGVRRRPWG KNWLGTYQTP EDAALAYDKA 120 AFKIRGSKAK LNFPHLIGSS NVEPVRVGPR RRSPSLKSSS SSFSIVDSSS STMPKP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	4e-16	90	140	5	69	ATERF1
3gcc_A	4e-16	90	140	5	69	ATERF1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitously expressed after ethylene treatment. {ECO:0000269\|PubMed:11950980}.

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269\|PubMed:11950980}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269\|PubMed:11950980, ECO:0000269\|PubMed:12068110}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN003808	1e-164	JN003808.1 Gossypium barbadense ethylene-responsive element-binding protein 5 (EREB5) mRNA, complete cds.
GenBank	KJ944171	1e-164	KJ944171.1 Gossypium hirsutum cultivar Reba B50 ethylene-responsive transcription factor ER-IXa5 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016681417.1	1e-107	PREDICTED: ethylene-responsive transcription factor 13-like
Swissprot	Q8L9K1	1e-32	ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBL	A0A0D2S0U2	1e-124	A0A0D2S0U2_GOSRA; Uncharacterized protein
STRING	Gorai.004G165700.1	1e-125	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44840.1	2e-27	ethylene-responsive element binding factor 13

Link Out ? help Back to Top
Phytozome	Gorai.004G165700.1

Publications ? help Back to Top
Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum. Plant Physiol., 2007. 145(4): p. 1588-99 [PMID:17965181] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]