PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G164000.3
Common NameB456_004G164000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 278aa    MW: 31109.5 Da    PI: 5.0397
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G164000.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013163185123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ykC+ C+k+F++   L  H  +H
  Gorai.004G164000.3 163 YKCETCNKVFNSYQALGGHRASH 185
                         9***********99999998887 PP
2zf-C2H212.90.00033212234123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp C k+Fs+   L  H r+H
  Gorai.004G164000.3 212 HECPVCFKVFSSGQALGGHKRSH 234
                         79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.783163190IPR007087Zinc finger, C2H2
PfamPF139124.3E-12163187IPR007087Zinc finger, C2H2
SMARTSM003550.012163185IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.53E-9163234No hitNo description
PROSITE patternPS000280165185IPR007087Zinc finger, C2H2
PfamPF139121.2E-11211234IPR007087Zinc finger, C2H2
SMARTSM003550.11212234IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743212239IPR007087Zinc finger, C2H2
PROSITE patternPS000280214234IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEKVKCKQLC LKSFANGETQ LRSNMLNLPI PPNVEQESAS PSYSSSSSEE KGQFYGLREN  60
PKRSIRFVDP EFVDADSVVV QSKESETESS KYPTQKRSRR TWDEPEQATS LSDTTTEEDI  120
AFCLMMLSRG QRKSKVAQHD DIDEEEEETD ESAEFNRTTR GKYKCETCNK VFNSYQALGG  180
HRASHKKIKT FETELAPENV GTTCSMTEKK THECPVCFKV FSSGQALGGH KRSHVAAATA  240
QTYVKSSNKL VVNFIDLNLP APVDDDDDDD DGFLMLK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6162711e-116JX616271.1 Gossypium hirsutum clone NBRI_GE60799 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475308.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A0D2S0P30.0A0A0D2S0P3_GOSRA; Uncharacterized protein
STRINGGorai.004G164000.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.12e-45C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]