PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 278aa MW: 31109.5 Da PI: 5.0397

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G164000.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	163	185	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H Gorai.004G164000.2 163 YKCETCNKVFNSYQALGGHRASH 185 9***********99999998887 PP
2	zf-C2H2	12.9	0.00033	212	234	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C k+Fs+ L H r+H Gorai.004G164000.2 212 HECPVCFKVFSSGQALGGHKRSH 234 79******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.783	163	190	IPR007087	Zinc finger, C2H2
Pfam	PF13912	4.3E-12	163	187	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.012	163	185	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	7.53E-9	163	234	No hit	No description
PROSITE pattern	PS00028	0	165	185	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.2E-11	211	234	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.11	212	234	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.743	212	239	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	214	234	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MEKVKCKQLC LKSFANGETQ LRSNMLNLPI PPNVEQESAS PSYSSSSSEE KGQFYGLREN 60 PKRSIRFVDP EFVDADSVVV QSKESETESS KYPTQKRSRR TWDEPEQATS LSDTTTEEDI 120 AFCLMMLSRG QRKSKVAQHD DIDEEEEETD ESAEFNRTTR GKYKCETCNK VFNSYQALGG 180 HRASHKKIKT FETELAPENV GTTCSMTEKK THECPVCFKV FSSGQALGGH KRSHVAAATA 240 QTYVKSSNKL VVNFIDLNLP APVDDDDDDD DGFLMLK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616271	1e-116	JX616271.1 Gossypium hirsutum clone NBRI_GE60799 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012475308.1	0.0	PREDICTED: zinc finger protein ZAT9-like
TrEMBL	A0A0D2S0P3	0.0	A0A0D2S0P3_GOSRA; Uncharacterized protein
STRING	Gorai.004G164000.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45120.1	2e-45	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Gorai.004G164000.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]