PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G158600.13
Common NameB456_004G158600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family BES1
Protein Properties Length: 625aa    MW: 69752.7 Da    PI: 5.514
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G158600.13genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822145.44.9e-45772191135
               DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssas.. 87 
                          gg++r+++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++  s+    +  +ag  +s  
  Gorai.004G158600.13  77 GGARRSRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQSSpAAGTSAGMTSSss 166
                          6899*****************************************************************954444433444444333301 PP

               DUF822  88 ..aspesslq...sslkssalaspvesysaspksssfpspssldsislasaas 135
                            +s++ +     ++ +ss  ++ ve  ++++k + +p ps++d  s+a a+s
  Gorai.004G158600.13 167 qmVSQQIPPPpatLQGVSSGYRTTVEYNACRMKGVFMPTPSHYDLSSTAPAQS 219
                          223333332221234569999***********************988775444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.4E-3879211IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514454.1E-157260621IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.805.5E-176263621IPR013781Glycoside hydrolase, catalytic domain
PfamPF013732.0E-97269600IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-61300314IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-61321339IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-61343364IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060347355IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR007501.7E-61436458IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-61509528IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-61543559IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-61560571IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-61578601IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MATSMQKLVG VSQEDDEEEM EMDVKEEDDE DEENGEKQIA AQMMIGVDEV MPSTSSSDQF  60
QYQPQLQEQV SNQSGGGGAR RSRPLEEKER TKLRERHRRA ITARILAGLR RHGNYNLRVR  120
ADINDVIAAL AREAGWVVLP DGTTFPSRSQ SSPAAGTSAG MTSSSSQMVS QQIPPPPATL  180
QGVSSGYRTT VEYNACRMKG VFMPTPSHYD LSSTAPAQSL GVVADGGEQT ERLPLIAGST  240
QVINDKQIIG LPTKLPERDF AGTPYVPVYV MLPLGVINMK CELADPDGLL KQLRVLKSIN  300
VDGVMVDCWW GIVEAHAPQE YNWNGYQRLF QMVRELKLKL QVVMSFHECG GNVGDDVCIP  360
LPHWVAEIGR SNPEIFFTDR EGRRNPECLS WGIDKERVLR GRTAVEVYFD YMRSFRVEFD  420
EFFEDGIISM VEVGLGPCGE LRYPSCPVKH GWRYPGIGEF QCYDQYMLKS LRKAAEMRGH  480
SFWARGPDNA GSYNSQPHET GFFCDGGGYD GYYGRFFLNW YSQVLLNHGD RVLSLAKLAF  540
DGTCITAKLP GIHWWYKAAS HAAELTAGYY NPCNRDGYTA IATMLQKHGA ALSFSCAEHH  600
ILEQQDHLRE ALADPRGLVW QGRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdr_A1e-13526562111365Beta-amylase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4422564e-56AM442256.2 Vitis vinifera contig VV78X202994.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475200.10.0PREDICTED: beta-amylase 7 isoform X1
RefseqXP_012475201.10.0PREDICTED: beta-amylase 7 isoform X1
RefseqXP_012475202.10.0PREDICTED: beta-amylase 7 isoform X1
RefseqXP_012475203.10.0PREDICTED: beta-amylase 7 isoform X1
RefseqXP_012475205.10.0PREDICTED: beta-amylase 7 isoform X1
RefseqXP_012475206.10.0PREDICTED: beta-amylase 7 isoform X1
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A0D2R5K10.0A0A0D2R5K1_GOSRA; Beta-amylase
STRINGGorai.004G158600.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]