PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G149500.1

Common Name

B456_004G149500, LOC105791517

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 477aa MW: 53050.6 Da PI: 6.6137

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G149500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.7	3.6e-12	296	341	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ +++Ka+ L Av YI++L Gorai.004G149500.1 296 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVAYINEL 341 699*********************6.....4*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	8.2E-52	26	194	IPR025610	Transcription factor MYC/MYB N-terminal
SuperFamily	SSF47459	3.79E-17	290	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.475	292	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.50E-13	295	346	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.6E-16	296	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.3E-10	296	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-15	298	347	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MEELIISPSS SSSLVSFSHE TPPSTLQQRL QHVLESQKDW WAYAIFWQTS NDDLGRLLLA 60 WGDGHFQGTN ESSKPGANHF QGERRKVMKG IQALIGDNHD IDMGEAEWFY MISLTRCFSA 120 GDGIPGKCLT TGSLVWLTGA HELQFYNCER AKEAQLHGIE TLVCIPTSCG VLELGSSEII 180 RENWGLVQQV KYLFGSDLIR LLPKQSSPNQ FLDRNISFSD MGVIAGVQEQ EHASLGFKTK 240 KDCPKHGELS FVNSDHSDSE CRFRAATESN SNSNTEKRIP KKRGRKPGSG RETLLNHVEA 300 ERQRREKLNH RFYALRAVVP NVSRMDKASL LSDAVAYINE LKSKIEDLQS ELGRDRKKVK 360 IETVDGMDNQ STTTSVEQAA KPSSNSSSGN AGSNGFELDI KIIGNDAMIR VQSENVNHPA 420 ARLMDALRNL EFRVHHASMS CVNDLMIQDV VVSFTENGFG LHEQGLKSAI LTRLDQ*

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MEELIISPSS SSSLVSFSHE TPPSTLQQRL QHVLESQKDW WAYAIFWQTS NDDLGRLLLA  60
WGDGHFQGTN ESSKPGANHF QGERRKVMKG IQALIGDNHD IDMGEAEWFY MISLTRCFSA  120
GDGIPGKCLT TGSLVWLTGA HELQFYNCER AKEAQLHGIE TLVCIPTSCG VLELGSSEII  180
RENWGLVQQV KYLFGSDLIR LLPKQSSPNQ FLDRNISFSD MGVIAGVQEQ EHASLGFKTK  240
KDCPKHGELS FVNSDHSDSE CRFRAATESN SNSNTEKRIP KKRGRKPGSG RETLLNHVEA  300
ERQRREKLNH RFYALRAVVP NVSRMDKASL LSDAVAYINE LKSKIEDLQS ELGRDRKKVK  360
IETVDGMDNQ STTTSVEQAA KPSSNSSSGN AGSNGFELDI KIIGNDAMIR VQSENVNHPA  420
ARLMDALRNL EFRVHHASMS CVNDLMIQDV VVSFTENGFG LHEQGLKSAI LTRLDQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	4e-35	25	194	8	192	Transcription factor MYC3
4rqw_B	4e-35	25	194	8	192	Transcription factor MYC3
4rs9_A	4e-35	25	194	8	192	Transcription factor MYC3
4yz6_A	4e-35	25	194	8	192	Transcription factor MYC3
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012475055.1	0.0	PREDICTED: transcription factor MYC2-like
TrEMBL	A0A0D2R541	0.0	A0A0D2R541_GOSRA; Uncharacterized protein
STRING	Gorai.004G149500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3039	21	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17880.1	9e-89	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.004G149500.1
Entrez Gene	105791517

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]