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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G139300.1 | ||||||||
Common Name | B456_004G139300, LOC105791407 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TALE | ||||||||
Protein Properties | Length: 677aa MW: 75586.8 Da PI: 6.4171 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27 | 7.7e-09 | 433 | 470 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + Gorai.004G139300.1 433 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 470 554459******************************88 PP | |||||||
2 | BELL | 113.4 | 1.2e-36 | 295 | 363 | 2 | 70 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiae 70 ++elqk+k+kLls+leeVd+rY +y +q+++v+ssFeavag g+a +Y lA+ka+SrhFrcL+d+i++ Gorai.004G139300.1 295 FMELQKRKTKLLSMLEEVDRRYGHYSHQMKAVVSSFEAVAGSGAASVYSDLASKAMSRHFRCLRDRIVG 363 589****************************************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.5E-52 | 232 | 363 | IPR006563 | POX domain |
Pfam | PF07526 | 3.8E-44 | 238 | 362 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.6 | 411 | 474 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-9 | 414 | 478 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.22E-11 | 414 | 475 | No hit | No description |
SuperFamily | SSF46689 | 5.99E-17 | 415 | 481 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-27 | 417 | 480 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 9.1E-18 | 431 | 470 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 677 aa Download sequence Send to blast |
MVRELCEDKP RNIVSSTGFC YSDVSSGSSH PVSQIQGFES NPDPDIFNLA TGMEMIGFSK 60 NLPQQGDSYT AVWKGSLNKH GSNPDPSSNT INESKSDFYQ HEFNKPEFTA GISETETSTG 120 NLIVGAETGP WQENRLLVDD SSYRCVFPCE GNERPSQSLS LSLSSNNPST IGLQSFELRQ 180 TTSHSNHDQQ HDMRFIGSNS RDGFFEKAAN IQQQQQQAIQ SEFLEEAANL HHQGQFQVGS 240 SKFLVPTQEL LNEFCSLGTT QVDASKEKQI HKTKQCDDDN GASSSWKQPL YSLNFMELQK 300 RKTKLLSMLE EVDRRYGHYS HQMKAVVSSF EAVAGSGAAS VYSDLASKAM SRHFRCLRDR 360 IVGGIQATRK AMGEKDPVAP GTRRGETPRL KIIDKALRKQ RCFQQMNMME NQPWRPKRGL 420 PERSVSVLRA WLFEHFLHPY PSDVDKHILA RQTGLSRSQV SNWFINARVR LWKPMVEEIY 480 MEETKEHENN MASSDAVTTI DGDDNIGRPN PNILLTDQKP TPDQLVRIDS ECLSSIVSND 540 PEKNDAKSAK TLQNQHLHQH HYQKQSFETS GIMELDFSSY SHHHTSGGAS YNGSDYNANQ 600 SCFNGGGSVS LTLGLQQHGG TGVSLAFSPA AQSSIFYPRD HIEDCQPVQY SLLDGEAQHL 660 PYRSLIGAQL LHDFTG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-15 | 420 | 478 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-15 | 420 | 478 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 1e-15 | 420 | 477 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 1e-15 | 420 | 477 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269|PubMed:8521490}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269|PubMed:8521490}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012474926.1 | 0.0 | PREDICTED: homeobox protein BEL1 homolog isoform X1 | ||||
Swissprot | Q38897 | 1e-139 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | A0A0D2QXA7 | 0.0 | A0A0D2QXA7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G139300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5866 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 1e-123 | TALE family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G139300.1 |
Entrez Gene | 105791407 |
Publications ? help Back to Top | |||
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