PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 299aa MW: 33303.6 Da PI: 8.6291

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G133800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.4	1.8e-18	114	164	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+WvAeIr p + r r++lg++ tae Aa a+++a+ kl+ge Gorai.004G133800.1 114 QYRGVRQRH-WGKWVAEIRLPQN---RMRIWLGTYETAEAAAYAYDRAAYKLRGE 164 7*****9.******954...59***********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.17E-15	113	172	No hit	No description
SuperFamily	SSF54171	6.15E-22	114	171	IPR016177	DNA-binding domain
Pfam	PF00847	2.6E-12	114	164	IPR001471	AP2/ERF domain
SMART	SM00380	5.8E-35	114	177	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.011	114	171	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.9E-30	114	172	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.2E-10	115	126	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.2E-10	137	153	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MQEINHPLGF NDIVNIGSSL SQLILSGGSN TLDSIFSHCA PSTTTTSTAI TTNCIYEPIG 60 SSVYLRQREL LQKFSQENNG NASFSCNSLM NRIPSYPNPA STSNFYLSPE KKKQYRGVRQ 120 RHWGKWVAEI RLPQNRMRIW LGTYETAEAA AYAYDRAAYK LRGEYARLNF ENIKDPSKLG 180 FGDGARLSAL KNSVDAKIQA ICQKVKRERA KKKAKKDRPA EAEKTVKVTE SCSSSSSLSP 240 VVFSDSVSDG GFWRCENSPS SVSNDYPMMM AEEPQFEDCL LARMPSFDAE LIWDILAN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	5e-20	113	170	1	59	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	5e-20	111	170	2	62	ATERF1
3gcc_A	5e-20	111	170	2	62	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012474845.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF061-like
Swissprot	Q9C7W2	1e-66	ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBL	A0A0D2MXT7	0.0	A0A0D2MXT7_GOSRA; Uncharacterized protein
STRING	Gorai.004G133800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4174	25	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64380.1	6e-45	ERF family protein

Link Out ? help Back to Top
Phytozome	Gorai.004G133800.1
Entrez Gene	105791351

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]