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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G130500.4 | ||||||||
Common Name | B456_004G130500, LOC105791315 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 715aa MW: 77794.6 Da PI: 6.0933 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.2 | 8.2e-05 | 613 | 651 | 13 | 55 |
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLr ++P++ +k ls Le++++Y+ Lq Gorai.004G130500.4 613 RQLIQDRIKELRGIIPHS----GKQLSIDHLLERTIKYLLFLQ 651 67799************9....777***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.1E-7 | 10 | 48 | IPR025610 | Transcription factor MYC/MYB N-terminal |
Pfam | PF14215 | 3.0E-15 | 59 | 149 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 9.858 | 600 | 650 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-5 | 613 | 656 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.5E-4 | 613 | 660 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 715 aa Download sequence Send to blast |
MGEVAMGSAL KQTLKNLCCS NGWCYGVFWR FDPRNSMLLT MEDAYYEQKM GPLVDKMLLK 60 FHILGEGIIG QAAFTGKHQW IFSDSNGKGS DSAGNEKIFQ DESELQVQFS SGIKTIAVIS 120 VGRRGVVQFG STKKILERLE LLAETEKLFY DMGSCHGLTP LEIETCNLDG WFTSFILGQN 180 PTTEQGGCSV EPTGWSCSLQ SLIEPSCSVH DYSMNSVQQN LSHLTSQIQT ISIEAQPISA 240 GKISRVNSLA ANTPCTSEGS ILTSLPGEKG EWDPSIVFPK KDTEQNLQGH STFTSFYSTG 300 ELVDSELHNL DSFGKTKQEQ HSFGTNAGLL DSVISQQRSI EEFNLDDFIT DLSSSFTMDD 360 FSQWFSPLPQ HHIHGAGATT TTDPSCSVGV TSVPSVPIGG DAVINIPVGQ IVNSSKSSIA 420 DALTSSVEKS TMVHDNGNDL FSGTGMDFRL RKAGELSENI DMPLLHSANK VVASGMSSSM 480 AGKRKGLFSE LGLEELLGGV NNSSSVAKSS VEDEIFTTRR RKIENSSSNF HLGQLEGLSC 540 SGGGMNLAQH SHTWDKSNDT IFSKEFHLKS QVGLWIDDSY GVKAGNAVVT TAKKPTRKRA 600 KPGESSRPRP KDRQLIQDRI KELRGIIPHS GKQLSIDHLL ERTIKYLLFL QGVTKYADEI 660 KQADEPKLIG QGNRKLLKHN TMSGGATWAF EVGAQSIPIV VKDLNPPGQM LVEV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012474800.1 | 0.0 | PREDICTED: transcription factor bHLH157 isoform X3 | ||||
TrEMBL | A0A0D2MXP4 | 0.0 | A0A0D2MXP4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G130500.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31280.3 | 9e-26 | conserved peptide upstream open reading frame 7 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G130500.4 |
Entrez Gene | 105791315 |
Publications ? help Back to Top | |||
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