PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.004G129600.1 | ||||||||
Common Name | B456_004G129600, LOC105791300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 464aa MW: 52001.9 Da PI: 6.6326 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.1 | 3.3e-13 | 292 | 337 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er RR+++N++f Lr+++P+ K++Ka+ L Av YIk+L Gorai.004G129600.1 292 NHVEAERLRREKLNHRFYALRSVVPTV-----SKMDKASLLSDAVAYIKEL 337 799***********************6.....5****************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 5.2E-47 | 21 | 198 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.199 | 288 | 337 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.33E-18 | 290 | 355 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-16 | 291 | 349 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.49E-14 | 291 | 341 | No hit | No description |
Pfam | PF00010 | 1.0E-10 | 292 | 337 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.0E-16 | 294 | 343 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 464 aa Download sequence Send to blast |
MSSSSSSSMI SFGLDAPPPT LQQRLQFIVQ SRPEWWVYSI FWQASRDAHG RLVFSWGDGY 60 FQGTKGFAGK SGNKLSQPRF GRRRSGEEIQ SVFCEEIDIE RMVDGDVTDY EWYYTVSVNR 120 SFAIGDDILG KAFGSGSYIW LCGDQELQLY ECERVTEARM RGIQTLVFLS TSFGVVELGS 180 SEMIQENWSL VQLAKSIFGS EINCLGSKHP GLESQLQMST QTVPFLDFGK VASDQKEWIL 240 DDRKQQIEAK KDNCVLLRPL SSDSGADSEM EFSVGSKKRG RKSGTGKTTP SNHVEAERLR 300 REKLNHRFYA LRSVVPTVSK MDKASLLSDA VAYIKELRSQ IDKLDVKLKV QSQKAKLNAI 360 NVSNNQRNAS TFDSTRPTYD YGPNTMEVDV KIIGSEAMIR VQCPDVNYPA ARLMDALRDL 420 ELHVHHASVS TVNELVLQDV VVILPAGFIS EEMLRTAIFQ RCS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 7e-29 | 20 | 198 | 8 | 192 | Transcription factor MYC3 |
4rqw_B | 7e-29 | 20 | 198 | 8 | 192 | Transcription factor MYC3 |
4rs9_A | 7e-29 | 20 | 198 | 8 | 192 | Transcription factor MYC3 |
4yz6_A | 7e-29 | 20 | 198 | 8 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012474774.1 | 0.0 | PREDICTED: transcription factor MYC3-like | ||||
Refseq | XP_016695001.1 | 0.0 | PREDICTED: transcription factor MYC3-like | ||||
TrEMBL | A0A0D2PB73 | 0.0 | A0A0D2PB73_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8JXJ5 | 0.0 | A0A1U8JXJ5_GOSHI; transcription factor MYC3-like | ||||
STRING | Gorai.004G129600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3039 | 21 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00870.1 | 9e-66 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.004G129600.1 |
Entrez Gene | 105791300 |
Publications ? help Back to Top | |||
---|---|---|---|
|