PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G129200.2

Common Name

B456_004G129200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 363aa MW: 40738.4 Da PI: 6.7837

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G129200.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	99.4	5.1e-31	27	100	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk ++s + + +gl+ktLvfykgrap+g+k+dW+mheyrl Gorai.004G129200.2 27 PQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKIIYS-SFRRIGLRKTLVFYKGRAPHGQKSDWIMHEYRL 100 4679***********************************.8889*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	38.033	1	131	IPR003441	NAC domain
SuperFamily	SSF101941	4.45E-35	27	131	IPR003441	NAC domain
Pfam	PF02365	3.3E-15	27	100	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MLFGKLILTS LSPGIYKVQK CRIGSTPQND WYFFSHKDKK YPTGTRTNRA TAAGFWKATG 60 RDKIIYSSFR RIGLRKTLVF YKGRAPHGQK SDWIMHEYRL DDTNTLDSNA SNPIGDSMAE 120 EGWVVCRVFR KKNYQKTLES PKSSSSTSLD SKTQMLCSSN DGVLDQFFLY MGRTCKMEND 180 SLNIPNANTN NHLRMLVANN AGGISDGLHE SFMHLPRLES QSLPALPINT PHFDQHRSFK 240 PCFQSIDDML TEIEPSAAAG FDNTNNESKN GVNDWVTLDR LVASQLNGQV ETSKQLSCFT 300 DPNAVFGLCH DDDEDDDDIQ LSHINMHRSN QNPQVYSNEN DLWSLTKSSS PSSSDPLCHL 360 SV*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MLFGKLILTS LSPGIYKVQK CRIGSTPQND WYFFSHKDKK YPTGTRTNRA TAAGFWKATG  60
RDKIIYSSFR RIGLRKTLVF YKGRAPHGQK SDWIMHEYRL DDTNTLDSNA SNPIGDSMAE  120
EGWVVCRVFR KKNYQKTLES PKSSSSTSLD SKTQMLCSSN DGVLDQFFLY MGRTCKMEND  180
SLNIPNANTN NHLRMLVANN AGGISDGLHE SFMHLPRLES QSLPALPINT PHFDQHRSFK  240
PCFQSIDDML TEIEPSAAAG FDNTNNESKN GVNDWVTLDR LVASQLNGQV ETSKQLSCFT  300
DPNAVFGLCH DDDEDDDDIQ LSHINMHRSN QNPQVYSNEN DLWSLTKSSS PSSSDPLCHL  360
SV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-30	28	133	70	167	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-30	28	133	70	167	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-30	28	133	70	167	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-30	28	133	70	167	NO APICAL MERISTEM PROTEIN
3swm_A	2e-30	28	133	73	170	NAC domain-containing protein 19
3swm_B	2e-30	28	133	73	170	NAC domain-containing protein 19
3swm_C	2e-30	28	133	73	170	NAC domain-containing protein 19
3swm_D	2e-30	28	133	73	170	NAC domain-containing protein 19
3swp_A	2e-30	28	133	73	170	NAC domain-containing protein 19
3swp_B	2e-30	28	133	73	170	NAC domain-containing protein 19
3swp_C	2e-30	28	133	73	170	NAC domain-containing protein 19
3swp_D	2e-30	28	133	73	170	NAC domain-containing protein 19
4dul_A	1e-30	28	133	70	167	NAC domain-containing protein 19
4dul_B	1e-30	28	133	70	167	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012474773.1	0.0	PREDICTED: NAC domain-containing protein 43-like
TrEMBL	A0A0D2PB69	0.0	A0A0D2PB69_GOSRA; Uncharacterized protein
STRING	Gorai.004G129200.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46770.1	6e-61	NAC family protein

Link Out ? help Back to Top
Phytozome	Gorai.004G129200.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]