PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G128200.1 | ||||||||
Common Name | B456_004G128200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 399aa MW: 44720.3 Da PI: 9.1337 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 98.2 | 5.1e-31 | 98 | 186 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+kv tpsdv+k++rlv+pk++ae++ ++ +e++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ Gorai.004G128200.1 98 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRG 186 89***************************966778999*************************************************54 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.5E-42 | 89 | 203 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.5E-30 | 95 | 186 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.21E-27 | 96 | 185 | No hit | No description |
PROSITE profile | PS50863 | 14.804 | 98 | 203 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.6E-28 | 98 | 188 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.2E-21 | 98 | 199 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MDFGSSGREG LCEEEQMGKG KLPFTYSPPS PSSSSSQHKS QLPPLRNPGW EEQPRPIYDN 60 RHHRMTSEWL SYRRVDSDST LELRTSASAA DIEKEHMFDK VVTPSDVGKL NRLVIPKQHA 120 EKYFPLDSST NEKGLLLNFE DRNGKPWRFR YSYWNSSQSY VMTKGWSRFV KDKKLDAGDI 180 VSFQRGAGEV GKDRFFIDSK RKPDAPTLVS FHPHQHYFSL GRSIPWNPLL MRPPPTGRDH 240 LYLSPVNPIN RRNSYYGGYP TGSNVVNPGD TVGSLFYLRS AVGSGAPQMG MTQRQQQGGV 300 VEPIVFDSVP VVQSKAAPKR MRLFGVNMEC PMPESDECEM LTTSTLAHAT MAPQHPDQPP 360 SSSQHPLQLR LYNGTPLPPT DFLNANKGKA SLSFDLDT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-62 | 93 | 203 | 3 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-62 | 93 | 203 | 3 | 114 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012474748.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X1 | ||||
TrEMBL | A0A0D2RYH6 | 0.0 | A0A0D2RYH6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G128200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1307 | 28 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 6e-74 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G128200.1 |
Publications ? help Back to Top | |||
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