PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G128200.1
Common NameB456_004G128200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 399aa    MW: 44720.3 Da    PI: 9.1337
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G128200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.25.1e-3198186185
                         EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ 
  Gorai.004G128200.1  98 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRG 186
                         89***************************966778999*************************************************54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.5E-4289203IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.5E-3095186IPR015300DNA-binding pseudobarrel domain
CDDcd100172.21E-2796185No hitNo description
PROSITE profilePS5086314.80498203IPR003340B3 DNA binding domain
PfamPF023623.6E-2898188IPR003340B3 DNA binding domain
SMARTSM010194.2E-2198199IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDFGSSGREG LCEEEQMGKG KLPFTYSPPS PSSSSSQHKS QLPPLRNPGW EEQPRPIYDN  60
RHHRMTSEWL SYRRVDSDST LELRTSASAA DIEKEHMFDK VVTPSDVGKL NRLVIPKQHA  120
EKYFPLDSST NEKGLLLNFE DRNGKPWRFR YSYWNSSQSY VMTKGWSRFV KDKKLDAGDI  180
VSFQRGAGEV GKDRFFIDSK RKPDAPTLVS FHPHQHYFSL GRSIPWNPLL MRPPPTGRDH  240
LYLSPVNPIN RRNSYYGGYP TGSNVVNPGD TVGSLFYLRS AVGSGAPQMG MTQRQQQGGV  300
VEPIVFDSVP VVQSKAAPKR MRLFGVNMEC PMPESDECEM LTTSTLAHAT MAPQHPDQPP  360
SSSQHPLQLR LYNGTPLPPT DFLNANKGKA SLSFDLDT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-62932033114B3 domain-containing transcription factor NGA1
5os9_B1e-62932033114B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012474748.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X1
TrEMBLA0A0D2RYH60.0A0A0D2RYH6_GOSRA; Uncharacterized protein
STRINGGorai.004G128200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.16e-74B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]